View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5066-Insertion-2 (Length: 724)
Name: NF5066-Insertion-2
Description: NF5066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5066-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 8 - 388
Target Start/End: Complemental strand, 32076396 - 32076016
Alignment:
| Q |
8 |
atatagcaacatggagaaattatttagaaaaatgtcagcaaccaacatgttatatatgcttgcattgtgtttttatatgcaccaacaacaaaatgaacat |
107 |
Q |
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| T |
32076396 |
atatagcaacatggagaaattatttagaaaaatgtcagcaaccaacatgttatatatgcttggattgtgtttttatatgcaccaacaacaaaatgaacat |
32076297 |
T |
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| Q |
108 |
atttnnnnnnnnntgattagatttcatatcaatgaagaataattccgatgtaaaatacataggtatcacattggtggagtaaaacctcgattaggaatat |
207 |
Q |
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| T |
32076296 |
atttaaaacaaaatgattagatttcatatcaatgaagaataattccgatgtaaaatacgtaggtatcacattggtggagtaaaacctcgattaggaatat |
32076197 |
T |
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| Q |
208 |
gtagctataacataagtggattttacaaccgatgtaaaaaactcataactgatttggaatgtgctttttacaaaaatggatatcacatcggccgagaata |
307 |
Q |
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| T |
32076196 |
gtagctataacataagtggattttacaaccgatgtaaaaaactcataactgatttggaatgtgctttttacaaaaatggatatcacatcggtcgagaata |
32076097 |
T |
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| Q |
308 |
cacaaatgtaaaaaatacacttataacataggggacatacccaatttttatataaaaagagcggacggagaacgtgggtga |
388 |
Q |
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| T |
32076096 |
caccaatgtaaaaaatacacttataacataggggacatacccaatttttatataaaaagagtggacggagaacgtgggtga |
32076016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 496 - 713
Target Start/End: Complemental strand, 32075908 - 32075690
Alignment:
| Q |
496 |
tttaagctcaaaaactacctgaaatagtatctcaagaaaaactataaactcgtcaaagagatttgttaccaaacacttcatattttgatgaaacaagttt |
595 |
Q |
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| T |
32075908 |
tttaagttcaaaaactacctgaaatagtatctcaagaaaaactataaactcgtcaaagagatttgttaccaaacacatcatattttgatgaaacaagttt |
32075809 |
T |
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| Q |
596 |
ataagctataagttagcttatgggcattatcaaacacatcctaaat-nnnnnnnntatacggaaaataaatttgtttataaaaaccacctaattattata |
694 |
Q |
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| T |
32075808 |
ataagctataagttagcttatgggcattatcaaacacatccaaaataaaaaaaaatagacggaaaataaatttgtttataaaaaccacctaattattata |
32075709 |
T |
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| Q |
695 |
cacccacctatctattatt |
713 |
Q |
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| T |
32075708 |
caaccacctatctattatt |
32075690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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