View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5066-Insertion-6 (Length: 437)
Name: NF5066-Insertion-6
Description: NF5066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5066-Insertion-6 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 8 - 437
Target Start/End: Original strand, 51728654 - 51729083
Alignment:
| Q |
8 |
gtgatagcattctttcaacttttggaagcttgaatttgtcatccacaagtcctgaaagccacattgtgcgttactctgaagagtaaagatttgaataggt |
107 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
51728654 |
gtgatagcattctttcaacttttggaagcttgaacttgtcatccacaagtcctgaaagccacattgtgcgtaactctgaagagtaaagatttgaataggt |
51728753 |
T |
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| Q |
108 |
ctcaacatatcccacaaaagccatgtttggaatcaatggatggatggttcctctatcatgattagcataaatcaagctattagtttctctagtatattca |
207 |
Q |
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| T |
51728754 |
ctcaacgtatcccacgaaagccatgtttggaatcaatggatggatggttcctctatcatgattagcataaatcaagctattagtttctctagtatattca |
51728853 |
T |
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| Q |
208 |
tttaatttcaaagcgcgaaatgaatcacaaacaagtacttcttacctgtacaaaggtataaggccagaggggtactccaacaggctacaaaaaggctctg |
307 |
Q |
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| T |
51728854 |
tttaatttcaaagcgcgaaatgaatcacaaacaagtacttcttacctgtacaaaggtataaggccagaggggtactccaacaggctacaaaaaggctctg |
51728953 |
T |
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| Q |
308 |
gtaaaatggttttgatctttttctttccatcaaaaccagttgcaaggatcactacatcggcttccacctcagtgttatcttcaaatttgattccttcatt |
407 |
Q |
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| T |
51728954 |
gtaaaatggttttgatctttttctttccattaaaaccagttgcaaggatcactacatcggcttccacctcagtgttatcttcaaattcgattccttcatt |
51729053 |
T |
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| Q |
408 |
acaaaaccaccactttgatgcttttttaag |
437 |
Q |
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| T |
51729054 |
acaaaaccaccactttgatgcttttttaag |
51729083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 191
Target Start/End: Original strand, 51723423 - 51723591
Alignment:
| Q |
22 |
tcaacttttggaagcttgaatttgtcatccacaagtcctgaaagccacattgtgcgttactctgaagagtaaagatttgaataggtctcaacatatccca |
121 |
Q |
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| T |
51723423 |
tcaacttttgcaagcttgaaattgtcatctacaagtccgtaaagcaatatcgagcatagctctaaagagtgtagctttgaaacactctcaacatatcc-a |
51723521 |
T |
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| Q |
122 |
caaaagccatgtttggaatcaatggatggatggttcctctatcatgattagcataaatcaagctattagt |
191 |
Q |
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| T |
51723522 |
caaaagccttgtttgaaatcaatggatggatagttctccgatcacgattagaatgactcaagctattagt |
51723591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 277 - 434
Target Start/End: Complemental strand, 19056891 - 19056734
Alignment:
| Q |
277 |
gggtactccaacaggctacaaaaaggctctggtaaaatggttttgatctttttctttccatcaaaaccagttgcaaggatcactacatcggcttccacct |
376 |
Q |
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| T |
19056891 |
gggtattccaacaagctagaaaaaggctctggcaaaatggttttgagcttctttttcccatcataaccagttgcaagaagaacaacatcagcatcaattt |
19056792 |
T |
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| Q |
377 |
cagtgttatcttcaaatttgattccttcattacaaaaccaccactttgatgctttttt |
434 |
Q |
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| T |
19056791 |
tagtgttgtcatcaaattcaattcctccattccaaaaacaccactttgatgctctttt |
19056734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 277 - 434
Target Start/End: Original strand, 19188308 - 19188465
Alignment:
| Q |
277 |
gggtactccaacaggctacaaaaaggctctggtaaaatggttttgatctttttctttccatcaaaaccagttgcaaggatcactacatcggcttccacct |
376 |
Q |
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| T |
19188308 |
gggtattccaacaagctagaaaaaggctctggcaaaatggttttgagcttctttttcccatcataaccagttgcaagaagaacaacatcagcatcaattt |
19188407 |
T |
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| Q |
377 |
cagtgttatcttcaaatttgattccttcattacaaaaccaccactttgatgctttttt |
434 |
Q |
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| T |
19188408 |
tagtgttgtcatcaaattcaattcctccattccaaaaacaccactttgatgctctttt |
19188465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 163
Target Start/End: Complemental strand, 19059587 - 19059514
Alignment:
| Q |
90 |
gtaaagatttgaataggtctcaacatatcccacaaaagccatgtttggaatcaatggatggatggttcctctat |
163 |
Q |
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||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||| | |||||||||| |
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| T |
19059587 |
gtaaagatttgaaacactctcaacataacccacaaaggccatgtttggaatcaatggatgaacagttcctctat |
19059514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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