View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5066-Insertion-7 (Length: 323)

Name: NF5066-Insertion-7
Description: NF5066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5066-Insertion-7
NF5066-Insertion-7
[»] chr7 (3 HSPs)
chr7 (8-139)||(30078135-30078266)
chr7 (44-139)||(30070803-30070898)
chr7 (233-323)||(30078359-30078449)
[»] chr8 (1 HSPs)
chr8 (94-128)||(10810606-10810640)


Alignment Details
Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 30078135 - 30078266
Alignment:
Q  8 agattgttgttgggattgttgtttttgcggcaacaaaggtagaaagagaggatgagagtggcgaggaggacgagaaaagctagggttatggctatggagt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30078135 agattgttgttgggattgttgtttttgcggcaacaaaggtagaaagagaggatgagagtggcgaggaggacgagaaaagctagggttatggctatggagt 30078234  T
Q  108 agccaaggccaaggttggtgaagaaactatgt 139  Q
    ||||||||||||||||||||||||||||||||    
T  30078235 agccaaggccaaggttggtgaagaaactatgt 30078266  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 44 - 139
Target Start/End: Original strand, 30070803 - 30070898
Alignment:
Q  44 aggtagaaagagaggatgagagtggcgaggaggacgagaaaagctagggttatggctatggagtagccaaggccaaggttggtgaagaaactatgt 139  Q
    ||||||||||| |||| ||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30070803 aggtagaaagaaaggaagagagtggcaagaaggacgagaaaagctagggttatggctgtggagtagccaaggccaaggttggtgaagaaactatgt 30070898  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 233 - 323
Target Start/End: Original strand, 30078359 - 30078449
Alignment:
Q  233 tgagggagaaacttaggggggttaggatggcannnnnnnnnnnaggggtaaagggtgggtgagagtttcatctgtagcatttaatactgga 323  Q
    ||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30078359 tgagggagaaacttaggggggttaggatggcatttttttttttaggggtaaagggtgggtgagagtttcatctgtagcatttaatactgga 30078449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 128
Target Start/End: Original strand, 10810606 - 10810640
Alignment:
Q  94 tatggctatggagtagccaaggccaaggttggtga 128  Q
    |||||||||||||||||||| ||||||||||||||    
T  10810606 tatggctatggagtagccaaagccaaggttggtga 10810640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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