View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5066-Insertion-8 (Length: 148)

Name: NF5066-Insertion-8
Description: NF5066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5066-Insertion-8
NF5066-Insertion-8
[»] chr7 (7 HSPs)
chr7 (16-148)||(47362682-47362813)
chr7 (36-147)||(11698067-11698175)
chr7 (23-87)||(11697371-11697434)
chr7 (51-88)||(17889429-17889466)
chr7 (37-133)||(47362084-47362177)
chr7 (37-133)||(47361149-47361242)
chr7 (51-86)||(48709179-48709214)
[»] chr6 (2 HSPs)
chr6 (22-148)||(1825444-1825565)
chr6 (48-86)||(29299086-29299124)
[»] chr3 (6 HSPs)
chr3 (36-148)||(7724008-7724117)
chr3 (47-148)||(7725573-7725671)
chr3 (48-87)||(23707181-23707220)
chr3 (48-87)||(23725637-23725676)
chr3 (48-87)||(23744093-23744132)
chr3 (48-87)||(23773769-23773808)
[»] chr4 (12 HSPs)
chr4 (47-148)||(3803123-3803222)
chr4 (38-148)||(48339695-48339802)
chr4 (35-96)||(52305849-52305909)
chr4 (36-96)||(35318322-35318381)
chr4 (30-96)||(35657456-35657521)
chr4 (49-145)||(44348777-44348875)
chr4 (22-87)||(33960518-33960582)
chr4 (51-88)||(44818626-44818663)
chr4 (32-87)||(30610241-30610295)
chr4 (8-45)||(48339541-48339578)
chr4 (51-87)||(10523697-10523733)
chr4 (51-87)||(25092815-25092851)
[»] chr2 (5 HSPs)
chr2 (22-148)||(22899905-22900027)
chr2 (22-87)||(43992354-43992418)
chr2 (54-96)||(17369147-17369189)
chr2 (49-87)||(3130175-3130213)
chr2 (109-137)||(22899420-22899448)
[»] chr8 (2 HSPs)
chr8 (35-98)||(42104441-42104503)
chr8 (51-88)||(527679-527716)
[»] scaffold0983 (1 HSPs)
scaffold0983 (47-138)||(1870-1959)
[»] chr1 (1 HSPs)
chr1 (51-88)||(1169221-1169258)
[»] chr5 (2 HSPs)
chr5 (22-96)||(39999068-39999141)
chr5 (51-87)||(30667408-30667444)


Alignment Details
Target: chr7 (Bit Score: 117; Significance: 6e-60; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 6e-60
Query Start/End: Original strand, 16 - 148
Target Start/End: Complemental strand, 47362813 - 47362682
Alignment:
Q  16 atgatgatgactatcttatatgagaatgatccatcaaccattagatcaaaaataaatgattgagattaaaaattcacatatatattcaccttattattac 115  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47362813 atgatgatgactatcttatatgagaatgatc-atcaaccactagatcaaaaataaatgattgagattaaaaattcacatatatattcaccttattattac 47362715  T
Q  116 atcaattctcataaactcatttctcttttcatc 148  Q
    ||||||||||||||||||||||| |||||||||    
T  47362714 atcaattctcataaactcatttcccttttcatc 47362682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 36 - 147
Target Start/End: Complemental strand, 11698175 - 11698067
Alignment:
Q  36 tgagaatgatccatcaaccattagatcaaaaataaatgattgagattaaaaattcacatatata-ttcaccttattattacatcaattctcataaactca 134  Q
    ||||||||||| ||||| |||||||||||||||||||| ||||||||||||| |||| ||| ||  ||| |   ||||||||||||||||||||||||||    
T  11698175 tgagaatgatc-atcaatcattagatcaaaaataaatggttgagattaaaaaatcacctatgtacctcaac---ttattacatcaattctcataaactca 11698080  T
Q  135 tttctcttttcat 147  Q
    ||||  |||||||    
T  11698079 tttccattttcat 11698067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 11697371 - 11697434
Alignment:
Q  23 tgactatcttatatgagaatgatccatcaaccattagatcaaaaataaatgattgagattaaaaa 87  Q
    ||||||| |||||||||||||||| |||||  ||||||||||||||||||| |||||||||||||    
T  11697371 tgactattttatatgagaatgatc-atcaattattagatcaaaaataaatggttgagattaaaaa 11697434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 17889466 - 17889429
Alignment:
Q  51 aaccattagatcaaaaataaatgattgagattaaaaat 88  Q
    ||||||||||||||||||||||||||||||||||||||    
T  17889466 aaccattagatcaaaaataaatgattgagattaaaaat 17889429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 47362084 - 47362177
Alignment:
Q  37 gagaatgatccatcaaccattagatcaaaaataaatgattgagattaaaaattcacatatata-ttcaccttattattacatcaattctcataaactc 133  Q
    |||||||||| |||||| ||||||||||||||| ||| |||||||| |||| |||||| ||||  | |||   |||||||||||||||||||||||||    
T  47362084 gagaatgatc-atcaactattagatcaaaaatagatggttgagattgaaaagtcacatgtatacctaacc---ttattacatcaattctcataaactc 47362177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 47361242 - 47361149
Alignment:
Q  37 gagaatgatccatcaaccattagatcaaaaataaatgattgagattaaaaattcacatatata-ttcaccttattattacatcaattctcataaactc 133  Q
    |||||||||| |||||| ||||||||||||||| ||| |||||||| |||| |||||| ||||  | |||   ||||| |||||||||||||||||||    
T  47361242 gagaatgatc-atcaactattagatcaaaaatagatggttgagattgaaaagtcacatgtatacctaacc---ttattgcatcaattctcataaactc 47361149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 48709214 - 48709179
Alignment:
Q  51 aaccattagatcaaaaataaatgattgagattaaaa 86  Q
    |||||| |||||||| ||||||||||||||||||||    
T  48709214 aaccatcagatcaaatataaatgattgagattaaaa 48709179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 9e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 22 - 148
Target Start/End: Complemental strand, 1825565 - 1825444
Alignment:
Q  22 atgactatcttatatgagaatgatccatcaaccattagatcaaaaataaatgattgagattaaaaattcacatatatattcaccttattattacatcaat 121  Q
    ||||||||||||||||||||||||  ||||||||||||||  |||||||||| |||| |||||||| |||||||||   |||||   |||||| ||||||    
T  1825565 atgactatcttatatgagaatgatt-atcaaccattagattcaaaataaatggttgacattaaaaagtcacatata-cctcacc---ttattagatcaat 1825471  T
Q  122 tctcataaactcatttctcttttcatc 148  Q
    |||||||||||||||||  ||||||||    
T  1825470 tctcataaactcatttcctttttcatc 1825444  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 29299086 - 29299124
Alignment:
Q  48 atcaaccattagatcaaaaataaatgattgagattaaaa 86  Q
    |||||||||||||||||||||| |||||| |||||||||    
T  29299086 atcaaccattagatcaaaaatatatgattcagattaaaa 29299124  T

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Target: chr3 (Bit Score: 52; Significance: 4e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 7724008 - 7724117
Alignment:
Q  36 tgagaatgatccatcaaccattagatcaaaaataaatgattgagattaaaaattcacatatata-ttcaccttattattacatcaattctcataaactca 134  Q
    ||||||||||| ||||||||||||||||| |||||||| ||||||||||||| |||||||| || ||||| |||||||   || |||||||||||| |||    
T  7724008 tgagaatgatc-atcaaccattagatcaataataaatggttgagattaaaaagtcacatatgtacttcactttattat---ataaattctcataaattca 7724103  T
Q  135 tttctcttttcatc 148  Q
    |||| |||||||||    
T  7724104 tttcccttttcatc 7724117  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 148
Target Start/End: Complemental strand, 7725671 - 7725573
Alignment:
Q  47 catcaaccattagatcaaaaataaatgattgagattaaaaattcacatatata-ttcaccttattattacatcaattctcataaactcatttctcttttc 145  Q
    |||||||||||||||||||||| |||| ||||||||||||| ||||||||  |  |||| |||||||   ||||||||||||||| ||||||| ||||||    
T  7725671 catcaaccattagatcaaaaat-aatggttgagattaaaaagtcacatatgcacctcactttattat---atcaattctcataaattcatttcccttttc 7725576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 23707220 - 23707181
Alignment:
Q  48 atcaaccattagatcaaaaataaatgattgagattaaaaa 87  Q
    |||||||||||||| ||||||| ||| |||||||||||||    
T  23707220 atcaaccattagataaaaaatatatggttgagattaaaaa 23707181  T

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Target: chr3; HSP #4
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 23725676 - 23725637
Alignment:
Q  48 atcaaccattagatcaaaaataaatgattgagattaaaaa 87  Q
    |||||||||||||| ||||||| ||| |||||||||||||    
T  23725676 atcaaccattagataaaaaatatatggttgagattaaaaa 23725637  T

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Target: chr3; HSP #5
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 23744132 - 23744093
Alignment:
Q  48 atcaaccattagatcaaaaataaatgattgagattaaaaa 87  Q
    |||||||||||||| ||||||| ||| |||||||||||||    
T  23744132 atcaaccattagataaaaaatatatggttgagattaaaaa 23744093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 23773808 - 23773769
Alignment:
Q  48 atcaaccattagatcaaaaataaatgattgagattaaaaa 87  Q
    |||||||||||||| ||||||| ||| |||||||||||||    
T  23773808 atcaaccattagataaaaaatatatggttgagattaaaaa 23773769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 2e-19; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 3803123 - 3803222
Alignment:
Q  47 catcaaccattagatcaaaaataaatgattgagattaaaaattcacatatatat-tcaccttattattacatcaattctcataaactcatttctcttttc 145  Q
    ||||||||| ||||||| |||||||||  |||||||||||| |||||||| ||  ||||||||||||   ||||||||||||||||||||||| ||||||    
T  3803123 catcaaccaatagatcataaataaatggatgagattaaaaagtcacatatgtacctcaccttattat---atcaattctcataaactcatttcccttttc 3803219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 38 - 148
Target Start/End: Complemental strand, 48339802 - 48339695
Alignment:
Q  38 agaatgatccatcaaccattagatcaaaaataaatgattgagattaaaaattcacatatatattcaccttattattacatcaattctcataaactcattt 137  Q
    ||||||||| |||||||||||||||| ||||| ||| ||||||||||||| |||||||||||  |||  | |||||| |||| | |||||||||||||||    
T  48339802 agaatgatc-atcaaccattagatcataaatagatggttgagattaaaaagtcacatatata-ccacact-ttattatatcagtcctcataaactcattt 48339706  T
Q  138 ctcttttcatc 148  Q
    | |||||||||    
T  48339705 cccttttcatc 48339695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 52305849 - 52305909
Alignment:
Q  35 atgagaatgatccatcaaccattagatcaaaaataaatgattgagattaaaaattcacatat 96  Q
    |||||||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||||    
T  52305849 atgagaatgatc-atcaaccattagattaaaaataaatggttgagattaaaaactcacatat 52305909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 35318381 - 35318322
Alignment:
Q  36 tgagaatgatccatcaaccattagatcaaaaataaatgattgagattaaaaattcacatat 96  Q
    ||||||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||||    
T  35318381 tgagaatgatc-atcaaccattagattaaaaataaatggttgagattaaaaagtcacatat 35318322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 35657456 - 35657521
Alignment:
Q  30 cttatatgagaatgatccatcaaccattagatcaaaaataaatgattgagattaaaaattcacatat 96  Q
    ||||||||||||||||| |||| ||||||||| ||||||||||| |||||||||||||  |||||||    
T  35657456 cttatatgagaatgatc-atcatccattagataaaaaataaatggttgagattaaaaaggcacatat 35657521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 44348875 - 44348777
Alignment:
Q  49 tcaaccattagatcaaaaataaatgattgagattaaaaattcacatatata-ttcaccttattat-tacatcaattctcataaactcatttctcttttc 145  Q
    |||||| |||||||||||||  ||| ||||||||||||| |||||||| ||  |||||||||||| |  |||||||||||||||||| |||| ||||||    
T  44348875 tcaacccttagatcaaaaattgatggttgagattaaaaagtcacatatgtacctcaccttattatatcaatcaattctcataaactcgtttcccttttc 44348777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 33960582 - 33960518
Alignment:
Q  22 atgactatcttatatgagaatgatccatcaaccattagatcaaaaataaatgattgagattaaaaa 87  Q
    |||| |||||||||||||||||||  ||||||||| ||||||||| ||||||||| ||||||||||    
T  33960582 atgagtatcttatatgagaatgat-tatcaaccatcagatcaaaattaaatgattcagattaaaaa 33960518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 44818663 - 44818626
Alignment:
Q  51 aaccattagatcaaaaataaatgattgagattaaaaat 88  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  44818663 aaccattagatcaaaaataaatgcttgagattaaaaat 44818626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 30610295 - 30610241
Alignment:
Q  32 tatatgagaatgatccatcaaccattagatcaaaaataaatgattgagattaaaaa 87  Q
    ||||||||||||||  ||| |||||||||||||||||| ||| |||||||||||||    
T  30610295 tatatgagaatgatt-atccaccattagatcaaaaatagatggttgagattaaaaa 30610241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 48339541 - 48339578
Alignment:
Q  8 atatatatatgatgatgactatcttatatgagaatgat 45  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  48339541 atatatatatgagaatgactatcttatatgagaatgat 48339578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 10523733 - 10523697
Alignment:
Q  51 aaccattagatcaaaaataaatgattgagattaaaaa 87  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  10523733 aaccattggatcaaaaataaatggttgagattaaaaa 10523697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 25092851 - 25092815
Alignment:
Q  51 aaccattagatcaaaaataaatgattgagattaaaaa 87  Q
    ||||||||||||||||||  |||||||||||||||||    
T  25092851 aaccattagatcaaaaatggatgattgagattaaaaa 25092815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 1e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 22 - 148
Target Start/End: Complemental strand, 22900027 - 22899905
Alignment:
Q  22 atgactatcttatatgagaatgatccatcaaccattagatcaaaaataaatgattgagattaaaaattcacatatata-ttcaccttattattacatcaa 120  Q
    |||||||||||||||| || | ||| |||||||||||| | ||||||||||| ||||||||||||  ||| ||||||| || |||   ||||||||||||    
T  22900027 atgactatcttatatggga-taatc-atcaaccattagctaaaaaataaatggttgagattaaaatgtcaaatatatacttaacc---ttattacatcaa 22899933  T
Q  121 ttctcataaactcatttctcttttcatc 148  Q
    |||||||||||||||||  |||||||||    
T  22899932 ttctcataaactcattttccttttcatc 22899905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 43992354 - 43992418
Alignment:
Q  22 atgactatcttatatgagaatgatccatcaaccattagatcaaaaataaatgattgagattaaaaa 87  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||    
T  43992354 atgacaatcttatatgagaatgatc-atcaaccattagatcaaaaataaatggctgagattaaaaa 43992418  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 17369147 - 17369189
Alignment:
Q  54 cattagatcaaaaataaatgattgagattaaaaattcacatat 96  Q
    |||||||||||||||||||| ||||||||||||| ||||||||    
T  17369147 cattagatcaaaaataaatggttgagattaaaaagtcacatat 17369189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 3130213 - 3130175
Alignment:
Q  49 tcaaccattagatcaaaaataaatgattgagattaaaaa 87  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  3130213 tcaacccttagatcaaaaataaatgattaagattaaaaa 3130175  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 137
Target Start/End: Original strand, 22899420 - 22899448
Alignment:
Q  109 ttattacatcaattctcataaactcattt 137  Q
    |||||||||||||||||||||||||||||    
T  22899420 ttattacatcaattctcataaactcattt 22899448  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 42104441 - 42104503
Alignment:
Q  35 atgagaatgatccatcaaccattagatcaaaaataaatgattgagattaaaaattcacatatat 98  Q
    |||||||||||  |||||||||||||||||||||||||| ||| ||||||||| ||||||||||    
T  42104441 atgagaatgatt-atcaaccattagatcaaaaataaatggttgtgattaaaaagtcacatatat 42104503  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 527716 - 527679
Alignment:
Q  51 aaccattagatcaaaaataaatgattgagattaaaaat 88  Q
    ||||||||||||||||||||||||||||||||||||||    
T  527716 aaccattagatcaaaaataaatgattgagattaaaaat 527679  T

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Target: scaffold0983 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0983
Description:

Target: scaffold0983; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 138
Target Start/End: Complemental strand, 1959 - 1870
Alignment:
Q  47 catcaaccattagatcaaaaataaatgattgagattaaaaattcacatatata-ttcaccttattattacatcaattctcataaactcatttc 138  Q
    |||||||||||| || ||||||||||| |||||||||||||  |||||||  |  ||||||||||||   |||||||||||||||||||||||    
T  1959 catcaaccattaaattaaaaataaatggttgagattaaaaacacacatatgcacctcaccttattat---atcaattctcataaactcatttc 1870  T

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Target: chr1 (Bit Score: 38; Significance: 0.0000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 1169221 - 1169258
Alignment:
Q  51 aaccattagatcaaaaataaatgattgagattaaaaat 88  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1169221 aaccattagatcaaaaataaatgattgagattaaaaat 1169258  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 39999141 - 39999068
Alignment:
Q  22 atgactatcttatatgagaatgatccatcaaccattagatcaaaaataaatgattgagattaaaaattcacatat 96  Q
    ||||||||||||||||||||||||  ||||||||||  |  ||||||||||| |||||||||||||  |||||||    
T  39999141 atgactatcttatatgagaatgat-gatcaaccattgaaataaaaataaatggttgagattaaaaaggcacatat 39999068  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 30667444 - 30667408
Alignment:
Q  51 aaccattagatcaaaaataaatgattgagattaaaaa 87  Q
    ||||||||||||||||||  |||||||||||||||||    
T  30667444 aaccattagatcaaaaatggatgattgagattaaaaa 30667408  T

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