View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5066_high_1 (Length: 456)
Name: NF5066_high_1
Description: NF5066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5066_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 10 - 438
Target Start/End: Original strand, 30077711 - 30078139
Alignment:
| Q |
10 |
attatactaatcgaggaaaaagaaaattcacctcctccgtctccgatcagcagcatactgcgaaagcggaacaacctcttgaagcggagtagaaagcggc |
109 |
Q |
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| T |
30077711 |
attatcctaatcgaggaaaaagaaaattcacctcctccgtctccgatcagcagcatactgcgaaagcggaacaacctcttgaagcggagtagaaagcggc |
30077810 |
T |
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| Q |
110 |
gtcggaagcggggagtttcgacaaacgggacaagagccattaagcttcaaccatgaatcaagacaacatagatgaaagtaatgacgacattcaggcatca |
209 |
Q |
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| T |
30077811 |
gtcggaagcggggagtttcgacaaacgggacaagagccattaagcttcaaccatgaatcaagacaacatagatgaaagtaatgacgacattcaggcatca |
30077910 |
T |
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| Q |
210 |
tcctcagcatctccgaatccttgtactcacacaaacaaatggaacacgtggtgttctgtcctaaaacagttgcgctgtctctgctgaactgaaacctcgg |
309 |
Q |
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| T |
30077911 |
tcctcagcatctccgaatccttgtactcacacaaacaaatggaacacgtggtgttctgtcctaaaacagttgcgctgtctctgctgaactgaaacctcgg |
30078010 |
T |
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| Q |
310 |
atacgaatttatcatgttgtcttctagacccaccactgcgttttcttcatcgttttcagctatgaatatgtcagttcgtacaatgacaccctctgtgtag |
409 |
Q |
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| T |
30078011 |
atacgaatttatcatgttgtcttctagacccaccactgcgttttcttcatcgttttcagctatgaatatgtcagttcgtacaatgacaccctctgtgtag |
30078110 |
T |
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| Q |
410 |
ttgagagtgttagtgttgttgttgagatt |
438 |
Q |
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| T |
30078111 |
ttgagagtgttagtgttgttgttgagatt |
30078139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 231
Target Start/End: Original strand, 30084255 - 30084356
Alignment:
| Q |
130 |
acaaacgggacaagagccattaagcttcaaccatgaatcaagacaacatagatgaaagtaatgacgacattcaggcatcatcctcagcatctccgaatcc |
229 |
Q |
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|||||| ||||| || ||||||| ||||||||||| ||||| |||| | ||||||| || || |||||| ||||||||||||| |||||||| ||| |
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| T |
30084255 |
acaaactggacacgaaccattaaccttcaaccatgtatcaacacaatctcgatgaaaatagtggtgacattgcggcatcatcctcaaaatctccgattcc |
30084354 |
T |
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| Q |
230 |
tt |
231 |
Q |
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|| |
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| T |
30084355 |
tt |
30084356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 71 - 259
Target Start/End: Original strand, 10810163 - 10810351
Alignment:
| Q |
71 |
gaaagcggaacaacctcttgaagcggagtagaaagcggcgtcggaagcggggagtttcgacaaacgggacaagagccattaagcttcaaccatgaatcaa |
170 |
Q |
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| T |
10810163 |
gaaagtggaacaacttcttgtaacggagtagataacggcgttggcataggtgagttccgacaaacgggacaagaaccgttaagtttcaaccacgaatcaa |
10810262 |
T |
|
| Q |
171 |
gacaacatagatgaaagtaatgacgacattcaggcatcatcctcagcatctccgaatccttgtactcacacaaacaaatggaacacgtg |
259 |
Q |
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|||||||||| ||||| || || | |||||| ||||||||||| | |||||||||||||||||||||||||||||| || ||||||||| |
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| T |
10810263 |
gacaacataggtgaaaatagtgtctacattccggcatcatccttaacatctccgaatccttgtactcacacaaacagatcgaacacgtg |
10810351 |
T |
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