View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5067-Insertion-13 (Length: 289)

Name: NF5067-Insertion-13
Description: NF5067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5067-Insertion-13
NF5067-Insertion-13
[»] chr5 (1 HSPs)
chr5 (8-289)||(29415560-29415841)


Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 8 - 289
Target Start/End: Original strand, 29415560 - 29415841
Alignment:
Q  8 gcacactccatcataaggattagcaaaatgttgtatctattgtgttttctcacaaggatctgacacacacatatttaacagtaatgatgttgtcatgcaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29415560 gcacactccatcataaggattagcaaaatgttgtatctattgtgttttctcacaaggatctgacacacacacatttaacagtaatgatgttgtcatgcaa 29415659  T
Q  108 gatgcatgtaactaaatgacacactgataacatttctttgtgatgtaggagtctttggcagattgtggattctaaaaagtgagatgccaaataactgata 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29415660 gatgcatgtaactaaatgacacactgataacatttctttgtgatgtaggagtctttggcagattgtgaattctaaaaagtgagatgccaaataactgata 29415759  T
Q  208 taggaggccctggcatatttaatctgtcatagtttttcttgtatgaggactgtgatctaatagttatataacaaatttcata 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29415760 taggaggccctggcatatttaatctgtcatagtttttcttgtatgaggactgtgatctaatagttatataacaaatttcata 29415841  T

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