View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5067-Insertion-14 (Length: 171)
Name: NF5067-Insertion-14
Description: NF5067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5067-Insertion-14 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 6e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 6e-88
Query Start/End: Original strand, 8 - 171
Target Start/End: Complemental strand, 33121090 - 33120927
Alignment:
| Q |
8 |
acttggtgctggaagagaaggagaggaagaagatattgcttgcaccagcttccgttgcttaacctcttgctgcaaacaagcttttcaagaaaaccctcaa |
107 |
Q |
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| T |
33121090 |
acttggtgctggaagagaaggagaggaagaagatattgcttgcaccagcttccgttgcttaacctcttgctgcaaacaagcttttcaagaaaaccctcaa |
33120991 |
T |
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| Q |
108 |
gcttgtaaaaagaggtaggtatatatctaacctctttgtataataggaccttgcaactgcagga |
171 |
Q |
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| T |
33120990 |
gcttgtaaaaagaggtaggtatatatctaacctctttgtataataggaccttgcaactgcagga |
33120927 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 124
Target Start/End: Complemental strand, 45935681 - 45935619
Alignment:
| Q |
62 |
ttgcttaacctcttgctgcaaacaagcttttcaagaaaaccctcaagcttgtaaaaagaggta |
124 |
Q |
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| T |
45935681 |
ttgctaaacctcttgctgggaagaagctctccaagaaaacactcaagcttgttaaaagaggta |
45935619 |
T |
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