View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5067-Insertion-2 (Length: 960)
Name: NF5067-Insertion-2
Description: NF5067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5067-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 485; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 8 - 609
Target Start/End: Original strand, 7457611 - 7458214
Alignment:
| Q |
8 |
atatgttcccttctttttatcatattcaaaaaatagttctgacttaattaaccaagnnnnnnnttgatttgatccattaagnnnnnnnnctccatgattg |
107 |
Q |
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| T |
7457611 |
atatgttcccttctttttatcatattcaaaaaatagttctgacttaattaaccaagaaaacaattgatttgatccgttaagaaaaaaa-ctccatgattg |
7457709 |
T |
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| Q |
108 |
attggaaagattggaaagagtgcaatttgcatgtactaccatttggtaccaaaagatgtgc--aatgaagagcgtggatagaacagataccagaattaaa |
205 |
Q |
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| T |
7457710 |
attggaaagattggaaagagtgcaatttgcatgtactaccatttgttaccaaaagatgtgcgcaatgaagagcgtggatagaacagataccagaattaaa |
7457809 |
T |
|
| Q |
206 |
aagagaaaaaagtcatcatctgcaaacaccaacaacccttgtctctttatggaaccctaaaagataagctaattttgataattgcttacaagaacaaaca |
305 |
Q |
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| T |
7457810 |
aagagaaaaaagtcatcatctgcaaacaccaacaacccttgtctctttatggaaccctaaaagataagctaattttgataattgcttacaagaacaaaca |
7457909 |
T |
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| Q |
306 |
aagactagacttgatttgagtgagagctgatgaaaaagatgtctctcgttggttagggatagggagtgagaaaatatcacctagtagtaccatgcnnnnn |
405 |
Q |
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| T |
7457910 |
aagactagacttgatttgagtgagagctgatgaaaaagatgtctctcgttggttagggatagggagtgagaaaatatcacctagtagtaccatgc--ttt |
7458007 |
T |
|
| Q |
406 |
nnnnncttccaatttttgtggcaaattaattgattccacgttcttaccattaatcaatca---aactcaagacattagctagagagaactttttagaagg |
502 |
Q |
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| T |
7458008 |
tttttcttccaatttttgtggccaattaattgattccacgttcttaccattaatcaatcaaataactcaagacattagctagagagaactttttagaagg |
7458107 |
T |
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| Q |
503 |
acagacaaattaaaagtggtaacactttatttctttcatgtccaagattgaactggatattcctcaatagattgactagattaatgccacgtttgatcta |
602 |
Q |
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| T |
7458108 |
acagacaaattaaaagtggtaacactttatttctttcatgtccaagattgaactggatattcctcaatagattgactagattaatgccacgtttgatcta |
7458207 |
T |
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| Q |
603 |
tttttat |
609 |
Q |
| |
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||||||| |
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| T |
7458208 |
tttttat |
7458214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 653 - 960
Target Start/End: Original strand, 7458240 - 7458549
Alignment:
| Q |
653 |
tgttaagaggtgttggatgacacagattgcagttagaggacggttcatgttgcttagttctgctgtttgtgtgcatgggagaggggtgcacagaattcca |
752 |
Q |
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| T |
7458240 |
tgttaagaggtgttggatgacacagattgcagttagaggacggttcatgttgcttagttctgctgtttgtgtgcatgggagaggggtgcacacaattcca |
7458339 |
T |
|
| Q |
753 |
aataaacataatgccaagnnnnnnnnnnnnnnnncctatttggaatatttatagggttgaacctagtatgagtatatatgctaatgctactggtcccgat |
852 |
Q |
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| T |
7458340 |
aataaacataatgccaagtttttctttttcttttcctatttggaatatttatagggttgaaccaagtatgagtatatatgctaatgctactggtcccgat |
7458439 |
T |
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| Q |
853 |
tcattggttggctttaaaagattgacagcaattaagtaaagtcaacaaacaacagcataacctttgnnnnnnnattgcaggaagtaatat-actc-aata |
950 |
Q |
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| T |
7458440 |
tcattggttggctttaaaagattgacagcaattaagtaaagtcaacaaacaacagcataacttttgtttttttattgcaggaagtaatataactcaaata |
7458539 |
T |
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| Q |
951 |
cagtgcacat |
960 |
Q |
| |
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|||||||||| |
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| T |
7458540 |
cagtgcacat |
7458549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 259 - 378
Target Start/End: Original strand, 7442585 - 7442704
Alignment:
| Q |
259 |
accctaaaagataagctaattttgataattgcttacaagaacaaacaaagactagacttgatttgagtgagagctgatgaaaaagatgtctctcgttggt |
358 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| |
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| T |
7442585 |
accctaaaagataagctaattttgatcattgcttacaagaagaaagaaagactagacttgatttgagtgagagcagattaaaaagatgtctctcattggt |
7442684 |
T |
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| Q |
359 |
tagggatagggagtgagaaa |
378 |
Q |
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||||| |||||| ||||||| |
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| T |
7442685 |
tagggttagggaatgagaaa |
7442704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 451 - 609
Target Start/End: Original strand, 7443761 - 7443926
Alignment:
| Q |
451 |
accattaatcaatcaaactcaagacattagctagagagaacttttt----ag-aaggacagacaaattaaaagtggtaacactttatttctttcatgtcc |
545 |
Q |
| |
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|||||||||||||||| ||| ||||||| |||||||||| |||| || |||||||||||||||||||||||| | |||||||||||||| ||||| |
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| T |
7443761 |
accattaatcaatcaagtccaaaacattagatagagagaaccttttgtttagtaaggacagacaaattaaaagtggtcaaactttatttctttcttgtcc |
7443860 |
T |
|
| Q |
546 |
aagat--tgaactggatattcctcaatagattgactagattaatgccacgtttgatctatttttat |
609 |
Q |
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| T |
7443861 |
aggatattgaactgaatattcctcaatagattgactagattaatgccacgtttgatctatttttat |
7443926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 265
Target Start/End: Original strand, 7441902 - 7441984
Alignment:
| Q |
182 |
gatagaacagataccagaattaaaaagag--aaaaaagtcatcatctgcaaacaccaacaacccttgtctctttatggaaccctaa |
265 |
Q |
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| T |
7441902 |
gatagaacagatacca-aataaaaaagagggaaaaaagtctt--tctgcaaacaccaacaaccctggtctctttagggaaccctaa |
7441984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 663 - 727
Target Start/End: Original strand, 7443970 - 7444035
Alignment:
| Q |
663 |
tgttggatgacacagatt-gcagttagaggacggttcatgttgcttagttctgctgtttgtgtgca |
727 |
Q |
| |
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| T |
7443970 |
tgttggatgacacagatttgcagttagaggacggtccatgttacttggtgctgctgtgtgtgtgca |
7444035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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