View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5067-Insertion-5 (Length: 739)
Name: NF5067-Insertion-5
Description: NF5067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5067-Insertion-5 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 647; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 647; E-Value: 0
Query Start/End: Original strand, 8 - 739
Target Start/End: Original strand, 835135 - 835881
Alignment:
| Q |
8 |
ttttctccttttgtgacttgccataatttcaaattggttgattctggatatatgagttcttttttcataactttagatatacaatagaacttctcttgga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
835135 |
ttttctccttttgtgacttgccataatttcaaattggttgattctggatatatgagttcttttttcataactttagatatacaatagaacttctcttgga |
835234 |
T |
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| Q |
108 |
atgttctgcacaatgattggtattgatacctagcata----------------acaaatagtactattagtaatatattgctcctctcaatcactaatac |
191 |
Q |
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| T |
835235 |
atgttctgcacaatgattggtattgatacctagcatacctaaagtcttttctaacaaatagtactgttagtaatatattgctcctctcaatcactaatac |
835334 |
T |
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| Q |
192 |
atggaatgaatttgtaattcttacatctactggcctttgttgttcacagatagaacatactcgaaacctagaaagtggatgcgaggtaaaggacgtgaaa |
291 |
Q |
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| T |
835335 |
atggaatgaatttgtaattcttacatctactggcctttgttgttcacagatagaacatactcgaaacctagaaagtggatgcgaggtaaaggacgtgaaa |
835434 |
T |
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| Q |
292 |
ccctgcaatttggttgctgctacaattatgcagtggtaagtaattaaggtgcatt---ttagttttcatctctagttagtagttactatttgatacttat |
388 |
Q |
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| T |
835435 |
ccctgcaatttggctgctgctacaattatgcagtggtaagtaattaaggtgcattattttagttttcatctctagt----agttactatttgatacttat |
835530 |
T |
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| Q |
389 |
tacttttgtaaaatgttgcaggacaaatatggcaaccctcctggtatatgtagaactgaagaggttgatcctttgccggacgtgttcaagcaaatgataa |
488 |
Q |
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| T |
835531 |
tacttttgtaaaatgttgcaggacaaatatggtaaccctcctggtatatgtagaactgaagaggttgatcctttgccggacgtgttcaagcaaatgataa |
835630 |
T |
|
| Q |
489 |
agagaatggttagatggaacataattcctccgacgtgtgttcctgacagttgcattgtcaacatatatgatgtaggggactgcattcctcctcatattga |
588 |
Q |
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| T |
835631 |
agagaatggttagatggaacataattcctccgacgtgtgttcctgacagttgcattgtcaacatatatgatgtaggggactgcattcctcctcacattga |
835730 |
T |
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| Q |
589 |
ccatcatgactttgtcaggccgttttattccgtctcattcttgaacgaagctaaaatattatttggttcaaatctgaaagcaattcaacccggagagttt |
688 |
Q |
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| T |
835731 |
ccatcatgactttgtcaggccgttttattccgtctcattcttgaacgaagctaaaatattatttggttcaaatctgaaagaaattcaacccggagagttt |
835830 |
T |
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| Q |
689 |
tcgggtcctgcttctatttctttgcctctagggtaagctacttattttcca |
739 |
Q |
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| T |
835831 |
tcgggtcctgcttctatttctttgcctctagggtaagctacttattttcca |
835881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 190 - 714
Target Start/End: Original strand, 813597 - 814123
Alignment:
| Q |
190 |
acatggaatgaatttgtaattcttacatctactggcctttgttgttcacagatagaacatactcgaaacctagaaagtggatgcgaggtaaaggacgtga |
289 |
Q |
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| T |
813597 |
acatggaatgaatttgtaattcttacatctaccg-cctttattgttcacagaaagaacatattcaaaacctagaaagtggatgcgaggtaaaggacgtga |
813695 |
T |
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| Q |
290 |
aaccctgcaatttggttgctgctacaattatgcagtggtaagtaattaaggtgc---attttagttttcatctctagttagtagttactatttgatactt |
386 |
Q |
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| T |
813696 |
aaccctacaatttggttgctgctacaactatgcagtggtaagtaattaaggttgttgatttcagttttcatctctagttagtagttactaattgatacta |
813795 |
T |
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| Q |
387 |
attacttttgtaaaatgttgcaggacaaatatggcaaccctcctggtatatgtagaactgaagaggttgatcctttgccggacgtgttcaagcaaatgat |
486 |
Q |
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| T |
813796 |
attatttttgtaaaatgttgcaggacaaaaatggtaacccccctggtataagtagaactgaagaggttgatccattaccacgcatgttcaagcaaatgat |
813895 |
T |
|
| Q |
487 |
aaagagaatggttagatggaacataattcctccgacgtgtgttcctgacagttgcattgtcaacatatatgatgtaggggactgcattcctcctcatatt |
586 |
Q |
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| T |
813896 |
aaagaggatggttagatggaaaataattcctccgacgtgtgttcctgacagttgcattgtcaacatatatgatgtaggggactgcattcctcctcatatt |
813995 |
T |
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| Q |
587 |
gaccatcatgactttgtcaggccgttttattccgtctcattcttgaacgaagctaaaatattatttggttcaaatctgaaagcaattcaacccggagagt |
686 |
Q |
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| T |
813996 |
gaccatcatgactttgtcaggccgttttattccgtctctttcttgaacaaagctaaaatattatttggttcaaatttgaaagctgttcgtccaggagagt |
814095 |
T |
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| Q |
687 |
tttcgggtcctgcttctatttctttgcc |
714 |
Q |
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| T |
814096 |
tttttggtcccgcttcgatttctttgcc |
814123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 813443 - 813547
Alignment:
| Q |
25 |
ttgccataatttcaaattggttgattctggatatatgagttcttt-tttcataactttagatatacaatagaacttctcttggaatgttctgcacaatga |
123 |
Q |
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|||| ||| |||||||||||||||||||||||| || | |||||| ||||||||| ||| |||||| |||| | ||||| ||||||||||||||||| | |
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| T |
813443 |
ttgcaatagtttcaaattggttgattctggatacatcacttctttctttcataacgtta--tatacactagatcctctctaggaatgttctgcacaataa |
813540 |
T |
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| Q |
124 |
ttggtat |
130 |
Q |
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||||||| |
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| T |
813541 |
ttggtat |
813547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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