View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5067-Insertion-6 (Length: 637)
Name: NF5067-Insertion-6
Description: NF5067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5067-Insertion-6 |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (4 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 7 - 637
Target Start/End: Original strand, 4083502 - 4084128
Alignment:
| Q |
7 |
agttgcttattcccttgcaaactttggcctaactatgagttcttttgttttgcttgttgatctttttcaatattttcactttcttaaggacaaagtttct |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4083502 |
agttgcttattcccttgcaaactttggcctaactatgagttcttttgttttgcttgttgatctttttcaatattttcactttcttaagtacaaagtttct |
4083601 |
T |
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| Q |
107 |
atggccagtctcttcttcacatctaaaatctaatctaatcaagtgggatgcaaaataatattatattgtatcacaaaatatcgagttatgttatacttta |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4083602 |
atggccagtctcttcttcacatctaaaatctaatctaatcaagtgggatgcaaaataatattatattgtatcacaaaatatcgagttatgttatacttta |
4083701 |
T |
|
| Q |
207 |
agcaacatgacaagcaaagatcgaaggaagtgagactagtaattgatataattgatggttgttcttcgaatttgttttgttaaacaattcaagagaaaaa |
306 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4083702 |
cgcaacatgacaagcaaaga--gaaggaagtgagactagtaattgatataattgatggttgttcttcgaatttgttttgttaaactattcaagagaaaaa |
4083799 |
T |
|
| Q |
307 |
tgtttaagactataaccgacatcgttttttcacatagacacagtgttcatcagttttcgtcaaaagcattgatatcacatgaaacaaagctgatggtttt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4083800 |
tgtttaagactataaccgacatcgttttttcacatagacacagtgttcatgagttttcgtcaaaagcattgatatcacatgaaacaaagctgatggttat |
4083899 |
T |
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| Q |
407 |
ccaaaaaatactcgaagcatgagtaaaataacctactaccagaagctaataaaatcatttgaagtgtgatgttaggtttatgttatgaatcacatagata |
506 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4083900 |
cc-aaaaatactcgaagcatgagtaaaataacctactaccagaagctaataaaatcatttgaagtgtgacgttaggtttatgttatgaatcacatagata |
4083998 |
T |
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| Q |
507 |
atcttgacaataattagagatcaaatgttaaatgcagaacnnnnnnnnnnnnnnnnnnngagtaactactaactaatcagagatcaataattaagcaaca |
606 |
Q |
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| T |
4083999 |
atcttgacaataattagagatcaaatgttaaatgcagaac-aaaataaaataaaaaaatgagtaactactaactaatcagagatcaataattaagcaaca |
4084097 |
T |
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| Q |
607 |
gattcaccataaaaaataagttataaataag |
637 |
Q |
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| T |
4084098 |
aattcaccataaaaaataagttataaataag |
4084128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 566 - 637
Target Start/End: Original strand, 44301285 - 44301356
Alignment:
| Q |
566 |
gagtaactactaactaatcagagatcaataattaagcaacagattcaccataaaaaataagttataaataag |
637 |
Q |
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| T |
44301285 |
gagtaactactaactaatcagagatcaataattaagcagcagatttaccataaaaaataagttataaataag |
44301356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 566 - 637
Target Start/End: Original strand, 44312184 - 44312256
Alignment:
| Q |
566 |
gagtaactactaactaatcagagatcaataattaagcaacagattcaccat-aaaaaataagttataaataag |
637 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
44312184 |
gagtaactactaactaatcagagatcaataattaagcaacaaattcaccataaaaaaataagttataaataag |
44312256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 567 - 631
Target Start/End: Original strand, 43895902 - 43895966
Alignment:
| Q |
567 |
agtaactactaactaatcagagatcaataattaagcaacagattcaccataaaaaataagttata |
631 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |||| ||| ||||| ||| ||||| |
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| T |
43895902 |
agtaactactaaataatcagagatcaataattaagcaacaaattccccagaaaaagtaaattata |
43895966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 567 - 622
Target Start/End: Original strand, 44306353 - 44306408
Alignment:
| Q |
567 |
agtaactactaactaatcagagatcaataattaagcaacagattcaccataaaaaa |
622 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |||| ||| |||||| |
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| T |
44306353 |
agtaactactaaataatcagagatcaataattaagcaacaaattccccagaaaaaa |
44306408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 589 - 637
Target Start/End: Complemental strand, 8159399 - 8159351
Alignment:
| Q |
589 |
atcaataattaagcaacagattcaccataaaaaataagttataaataag |
637 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8159399 |
atcaataattaagcaacagattcagcataaaaaataagttataaataag |
8159351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 11355493 - 11355559
Alignment:
| Q |
123 |
tcacatctaaaatctaatctaatcaagtgggatgcaaaataatattatattgtatcacaaaatatcgagt |
192 |
Q |
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||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||| |
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| T |
11355493 |
tcacacctagaatctaatctaatcaagtgggatgcaa---aatattatattgtatcataaaatattgagt |
11355559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 192
Target Start/End: Complemental strand, 11371901 - 11371835
Alignment:
| Q |
123 |
tcacatctaaaatctaatctaatcaagtgggatgcaaaataatattatattgtatcacaaaatatcgagt |
192 |
Q |
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||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||| |
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| T |
11371901 |
tcacacctagaatctaatctaatcaagtgggatgcaa---aatattatattgtatcataaaatattgagt |
11371835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 11355674 - 11355715
Alignment:
| Q |
293 |
attcaagagaaaaatgtttaagactataaccgacatcgtttt |
334 |
Q |
| |
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|||||||||||||||| | |||| |||||||||||||||||| |
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| T |
11355674 |
attcaagagaaaaatggtaaagattataaccgacatcgtttt |
11355715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 11371720 - 11371679
Alignment:
| Q |
293 |
attcaagagaaaaatgtttaagactataaccgacatcgtttt |
334 |
Q |
| |
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|||||||||||||||| | |||| |||||||||||||||||| |
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| T |
11371720 |
attcaagagaaaaatggtaaagattataaccgacatcgtttt |
11371679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 2018144 - 2018224
Alignment:
| Q |
99 |
aagtttctatggccagtctcttcttcacatctaaaatctaatctaatcaagtgggatgcaaaataatattatattgtatcacaa |
182 |
Q |
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||||||| |||| || ||||||||||| | |||| ||||||||||||||||||| ||||| ||||||||| |||||||||| |
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| T |
2018144 |
aagtttccatggtcaatctcttcttcaaacctaatgtctaatctaatcaagtggggtgcaa---aatattatactgtatcacaa |
2018224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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