View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5067-Insertion-8 (Length: 538)

Name: NF5067-Insertion-8
Description: NF5067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5067-Insertion-8
NF5067-Insertion-8
[»] chr3 (16 HSPs)
chr3 (137-538)||(37727618-37728019)
chr3 (137-538)||(33240185-33240586)
chr3 (137-183)||(48058264-48058310)
chr3 (137-192)||(45081476-45081532)
chr3 (137-191)||(17604048-17604102)
chr3 (137-183)||(31595124-31595170)
chr3 (137-183)||(31595873-31595919)
chr3 (137-183)||(54516951-54516997)
chr3 (137-183)||(54524701-54524747)
chr3 (128-192)||(25081550-25081615)
chr3 (137-192)||(1093160-1093216)
chr3 (137-192)||(18387634-18387690)
chr3 (137-213)||(36502368-36502444)
chr3 (144-191)||(45082206-45082254)
chr3 (137-192)||(46915783-46915839)
chr3 (137-212)||(55296506-55296582)
[»] chr1 (18 HSPs)
chr1 (8-146)||(32716673-32716811)
chr1 (137-191)||(10919383-10919437)
chr1 (137-183)||(2070776-2070822)
chr1 (137-183)||(2071485-2071531)
chr1 (137-191)||(23817588-23817642)
chr1 (137-190)||(13505307-13505360)
chr1 (137-190)||(19139620-19139673)
chr1 (137-183)||(4433916-4433962)
chr1 (137-187)||(13649357-13649407)
chr1 (137-183)||(19790829-19790875)
chr1 (137-183)||(25665711-25665757)
chr1 (137-183)||(25670658-25670704)
chr1 (137-183)||(50546071-50546117)
chr1 (140-212)||(15601451-15601524)
chr1 (143-190)||(4929803-4929851)
chr1 (137-189)||(22914697-22914749)
chr1 (137-192)||(36682270-36682326)
chr1 (137-192)||(51097502-51097558)
[»] chr6 (10 HSPs)
chr6 (137-236)||(29344604-29344703)
chr6 (137-197)||(22046415-22046476)
chr6 (137-197)||(22058823-22058884)
chr6 (137-173)||(32260137-32260173)
chr6 (137-183)||(15997548-15997594)
chr6 (137-192)||(30321294-30321350)
chr6 (137-197)||(1859791-1859852)
chr6 (137-192)||(18970658-18970715)
chr6 (137-197)||(22047206-22047267)
chr6 (154-190)||(7588197-7588233)
[»] chr5 (10 HSPs)
chr5 (137-232)||(18861880-18861975)
chr5 (147-209)||(17105364-17105426)
chr5 (137-183)||(33574039-33574085)
chr5 (137-183)||(35424255-35424301)
chr5 (137-191)||(12255123-12255177)
chr5 (137-190)||(24872617-24872670)
chr5 (137-190)||(25746785-25746838)
chr5 (137-192)||(17277760-17277816)
chr5 (137-192)||(22778234-22778290)
chr5 (137-192)||(27365638-27365694)
[»] chr4 (11 HSPs)
chr4 (137-236)||(29881567-29881666)
chr4 (137-191)||(56295223-56295278)
chr4 (137-191)||(1865487-1865541)
chr4 (137-198)||(6050753-6050814)
chr4 (137-190)||(11380268-11380321)
chr4 (137-191)||(55000629-55000684)
chr4 (137-183)||(17736570-17736616)
chr4 (137-170)||(6049813-6049846)
chr4 (137-198)||(50182445-50182506)
chr4 (137-190)||(50303374-50303427)
chr4 (137-165)||(56028651-56028679)
[»] chr2 (5 HSPs)
chr2 (137-191)||(13913465-13913520)
chr2 (137-222)||(3322899-3322985)
chr2 (137-197)||(44356802-44356863)
chr2 (137-183)||(12332056-12332102)
chr2 (137-197)||(44357593-44357654)
[»] scaffold1370 (2 HSPs)
scaffold1370 (137-191)||(918-972)
scaffold1370 (137-192)||(191-247)
[»] chr8 (6 HSPs)
chr8 (137-183)||(16723672-16723718)
chr8 (146-236)||(25229604-25229694)
chr8 (137-191)||(36228494-36228549)
chr8 (141-183)||(28540380-28540422)
chr8 (137-170)||(20105101-20105134)
chr8 (156-192)||(36698631-36698668)
[»] chr7 (3 HSPs)
chr7 (137-183)||(19068454-19068500)
chr7 (138-197)||(41115489-41115549)
chr7 (137-167)||(3772585-3772615)
[»] scaffold0006 (1 HSPs)
scaffold0006 (137-190)||(138542-138595)
[»] scaffold0285 (1 HSPs)
scaffold0285 (137-192)||(17542-17598)
[»] scaffold0085 (1 HSPs)
scaffold0085 (137-192)||(14946-15002)
[»] scaffold0086 (1 HSPs)
scaffold0086 (138-194)||(8441-8498)
[»] scaffold0025 (1 HSPs)
scaffold0025 (156-192)||(150593-150629)


Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 137 - 538
Target Start/End: Original strand, 37727618 - 37728019
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagagatgagaggactaaatgctagccattggattgaattggattaatatcaacggtt 236  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  37727618 tatatatatatagggcatatcaaatgagaggactcttaaaatgagagatgagaggattaaatgctagccattggattgaattgaattaatatcaacggtt 37727717  T
Q  237 tatatattaaaaaaggcacatgctggtctttcgtcttctctaactagctgcacgcttgggtttctcttgtttgttccatttttctagaaattgttccatg 336  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37727718 tatatattaaaaaaggcacatgctggtctttcatcttctctaactagctgcacgcttgggtttctcttgtttgttccatttttctagaaattgttccatg 37727817  T
Q  337 ttttaatctcatcccgtgaacaccttagatctggtatcatctaaatcttcacaacacaatatctgtaattttttgcaaaactgagtcacgcagagacacc 436  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37727818 ttttaatctcatcctgtgaacaccttagatctggtatcatctaaatcttcacaacacaatatctgtaattttttgcaaaactaagtcacgcagagacacc 37727917  T
Q  437 cataatcaaaatcttactttcctccatgtctccattgttggttcagaggaattcgaaaggttgatgcaccttcataacctctattgctcatgtgaccttc 536  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37727918 cataatcaaaatcttactttcctccatgtctccattgttggttcagaggaattcgaaaggttgatgcaccttcataacctctattgctcatgtgaccttc 37728017  T
Q  537 ca 538  Q
    ||    
T  37728018 ca 37728019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 137 - 538
Target Start/End: Original strand, 33240185 - 33240586
Alignment:
Q  137 tatatatata-gagggcatatcaaatgagaggactcttaaaatgagagatgagaggactaaatgctagccattggattgaattggattaatatcaacggt 235  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33240185 tatatatatatgagggcatatcaaatgagaggactcttaaaatgagagatgagaggactaaatgctggccattggattgaattggattaatatcaacggt 33240284  T
Q  236 ttatatattaaaaaaggcacatgctggtctttcgtcttctctaactagctgcacgcttgggtttctcttgtttgttccatttttctagaaattgttccat 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33240285 ttatatattaaaaaaggcacatgctggtctttcgtcttctctaactagctgcacgcttgggtttctcttgtttgttc-atttttctagaaattgttccat 33240383  T
Q  336 gttttaatctcatcccgtgaacaccttagatctggtatcatctaaatcttcacaacacaatatctgtaattttttgcaaaactgagtcacgcagagacac 435  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33240384 gttttaatctcatcttgtgaacaccttagatctggtatcatctaaatcttcacaacacaatatctgtaattttttgcaaaactaagtcacgcagagacac 33240483  T
Q  436 ccataatcaaaatcttactttcctccatgtctccattgttggttcagaggaattcgaaaggttgatgcaccttcataacctctattgctcatgtgacctt 535  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33240484 ccataatcaaaatcttactttcctccatgtctccattgttggttcaaaggaattcgaaaggttgatgcaccgtcataacctctattgctcatgtgacctt 33240583  T
Q  536 cca 538  Q
    |||    
T  33240584 cca 33240586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 48058264 - 48058310
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagag 183  Q
    |||||||||| |||||||||||| |||||||||| ||||||||||||    
T  48058264 tatatatatatagggcatatcaagtgagaggacttttaaaatgagag 48058310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 45081476 - 45081532
Alignment:
Q  137 tatatatatagagggcatatcaaatgagagga-ctcttaaaatgagagatgagagga 192  Q
    |||||||||| |||||||||||| |||||| | || |||||||||||||||||||||    
T  45081476 tatatatatatagggcatatcaagtgagagcaccttttaaaatgagagatgagagga 45081532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 17604048 - 17604102
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagagatgagagg 191  Q
    |||||||||| ||||  ||||||||||||||||| ||| | ||||||||||||||    
T  17604048 tatatatatatagggtgtatcaaatgagaggacttttatagtgagagatgagagg 17604102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 31595124 - 31595170
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagag 183  Q
    ||||||||||||||||||||||| |||||||| | || |||||||||    
T  31595124 tatatatatagagggcatatcaagtgagaggagtttttaaatgagag 31595170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 31595919 - 31595873
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagag 183  Q
    ||||||||||||||||||||||| |||||||| | || |||||||||    
T  31595919 tatatatatagagggcatatcaagtgagaggagtttttaaatgagag 31595873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 54516951 - 54516997
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagag 183  Q
    |||||||||||||||||| ||||||||||||| | || |||||||||    
T  54516951 tatatatatagagggcatttcaaatgagaggagtttttaaatgagag 54516997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 54524747 - 54524701
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagag 183  Q
    |||||||||| ||| ||| ||||||||||||||| ||||||||||||    
T  54524747 tatatatatataggacatttcaaatgagaggacttttaaaatgagag 54524701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 25081615 - 25081550
Alignment:
Q  128 gtgtgtgtgtatatatatagagggcatatcaaatgagagga-ctcttaaaatgagagatgagagga 192  Q
    |||||||| |||||||||| |||||||||||| ||||||||  | ||| | |||||||||||||||    
T  25081615 gtgtgtgtatatatatatatagggcatatcaagtgagaggagttgttatagtgagagatgagagga 25081550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 1093160 - 1093216
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggact-cttaaaatgagagatgagagga 192  Q
    |||||||||| |||||||||||| |||||||| |  ||| |||||||||||||||||    
T  1093160 tatatatatatagggcatatcaagtgagaggagtagttacaatgagagatgagagga 1093216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 18387634 - 18387690
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggact-cttaaaatgagagatgagagga 192  Q
    |||||||||| ||||||||||||||||||||| |  ||| |||||||||| ||||||    
T  18387634 tatatatatatagggcatatcaaatgagaggagtagttacaatgagagataagagga 18387690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 213
Target Start/End: Complemental strand, 36502444 - 36502368
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagagatgagaggactaaatgctagccattggatt 213  Q
    |||||||||| |||||||||||| |||||||| | |||   ||||||||||||||  | ||| ||| ||||||||||    
T  36502444 tatatatatatagggcatatcaagtgagaggagttttattgtgagagatgagagggtttaatcctaaccattggatt 36502368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 144 - 191
Target Start/End: Complemental strand, 45082254 - 45082206
Alignment:
Q  144 atagagggcatatcaaatgagagga-ctcttaaaatgagagatgagagg 191  Q
    ||||||| |||||||| |||||||| || ||||||||||||||||||||    
T  45082254 atagaggacatatcaagtgagaggatcttttaaaatgagagatgagagg 45082206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 46915783 - 46915839
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactc-ttaaaatgagagatgagagga 192  Q
    |||||||||| | |||||||||| |||||||| |  |||||||||||||||||||||    
T  46915783 tatatatatatatggcatatcaagtgagaggagttgttaaaatgagagatgagagga 46915839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 55296506 - 55296582
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggact-cttaaaatgagagatgagaggactaaatgctagccattggat 212  Q
    |||||||||| ||||||||||||||||||||| |  |||  ||||||||||||| |||| |||  || |||||||||    
T  55296506 tatatatatatagggcatatcaaatgagaggagtggttattatgagagatgagatgacttaataataaccattggat 55296582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 32716811 - 32716673
Alignment:
Q  8 agaacaacctagatagggtttctttctctctttctatttgtgtgaagagcgataattatcggtttcaaaaggttatgaacaatatataagagcaaactag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32716811 agaacaacctagatagggtttctttctctctttctatttgtgtgaagagcgataattatcggtttcaaaaggttatgaacaatatataagagcaaactag 32716712  T
Q  108 gttatcaggaaaactcaatagtgtgtgtgtatatatata 146  Q
    |||||||| || |||||||||||| | | ||||||||||    
T  32716711 gttatcagaaagactcaatagtgtatatatatatatata 32716673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 10919383 - 10919437
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagagatgagagg 191  Q
    |||||||||||||||  ||||||||||||| ||| ||||||||||||||||||||    
T  10919383 tatatatatagagggtgtatcaaatgagagcactattaaaatgagagatgagagg 10919437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 2070776 - 2070822
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagag 183  Q
    ||||||||||||||||||||||| ||||| |||| ||||||||||||    
T  2070776 tatatatatagagggcatatcaagtgagaagacttttaaaatgagag 2070822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 2071531 - 2071485
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagag 183  Q
    |||||||||| |||||||||||| |||||||||| ||||||||||||    
T  2071531 tatatatatatagggcatatcaagtgagaggacttttaaaatgagag 2071485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 23817588 - 23817642
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagagatgagagg 191  Q
    |||||||||| ||||  ||||||||||||| ||| ||||||||||||||||||||    
T  23817588 tatatatatatagggtgtatcaaatgagagcactattaaaatgagagatgagagg 23817642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 13505307 - 13505360
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagagatgagag 190  Q
    |||||||||| ||||  ||||||||||||||| | |||||||||||||||||||    
T  13505307 tatatatatatagggtgtatcaaatgagaggagtgttaaaatgagagatgagag 13505360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 19139673 - 19139620
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagagatgagag 190  Q
    |||||||||| ||||  ||||||||||||||| | |||||||||||||||||||    
T  19139673 tatatatatatagggtgtatcaaatgagaggagtgttaaaatgagagatgagag 19139620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 4433916 - 4433962
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagag 183  Q
    |||||||||||||||||| |||||| |||||| | ||||||||||||    
T  4433916 tatatatatagagggcatttcaaataagaggagttttaaaatgagag 4433962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 13649357 - 13649407
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagagatga 187  Q
    |||||||||| ||||  ||||||||||||||| | ||||||||||||||||    
T  13649357 tatatatatatagggtgtatcaaatgagaggagtgttaaaatgagagatga 13649407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 19790829 - 19790875
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagag 183  Q
    |||||||||| |||||||||||| |||||||| | ||||||||||||    
T  19790829 tatatatatatagggcatatcaagtgagaggagttttaaaatgagag 19790875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 25665711 - 25665757
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagag 183  Q
    |||||||||||||||||| |||||| |||||| | ||||||||||||    
T  25665711 tatatatatagagggcatttcaaataagaggagttttaaaatgagag 25665757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 25670704 - 25670658
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagag 183  Q
    |||||||||||||||||| |||||| |||||| | ||||||||||||    
T  25670704 tatatatatagagggcatttcaaataagaggagttttaaaatgagag 25670658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 50546117 - 50546071
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagag 183  Q
    |||||||||| |||||||||||| | |||||||| ||||||||||||    
T  50546117 tatatatatatagggcatatcaagtaagaggacttttaaaatgagag 50546071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 15601524 - 15601451
Alignment:
Q  140 atatatagagggcatatcaaatgagaggactcttaaaatgaga-gatgagaggactaaatgctagccattggat 212  Q
    ||||| |||||||||||||| ||||||| || || |||||||| |||||||||| |||||  ||||| ||||||    
T  15601524 atatacagagggcatatcaagtgagagggctttttaaatgagaggatgagaggagtaaataatagcccttggat 15601451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 143 - 190
Target Start/End: Original strand, 4929803 - 4929851
Alignment:
Q  143 tatagagggcatatcaaatgagaggac-tcttaaaatgagagatgagag 190  Q
    |||||||| |||||||| ||||||||| ||||| |||||||||||||||    
T  4929803 tatagaggacatatcaagtgagaggacatcttataatgagagatgagag 4929851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 22914749 - 22914697
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagagatgaga 189  Q
    |||||||||| ||||  |||||| |||||||| | ||||||||||||||||||    
T  22914749 tatatatatatagggtgtatcaagtgagaggagttttaaaatgagagatgaga 22914697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 36682326 - 36682270
Alignment:
Q  137 tatatatatagagggcatatcaaatgagagga-ctcttaaaatgagagatgagagga 192  Q
    |||||||||| |||||||||||||||||||||  | ||| | |||||||||||||||    
T  36682326 tatatatatatagggcatatcaaatgagaggagttgttatagtgagagatgagagga 36682270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 51097502 - 51097558
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggact-cttaaaatgagagatgagagga 192  Q
    |||||||||||||| |||||||| |||||||| |  ||| |||||||||||||||||    
T  51097502 tatatatatagaggacatatcaagtgagaggagtagttataatgagagatgagagga 51097558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 29344703 - 29344604
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagagatgagaggactaaatgctagccattggattgaattggattaatatcaacggtt 236  Q
    |||||||||||||||||| |||| ||| ||| || |||||||||||| |||||||  ||||||||| ||||| |||| ||||  ||||||||||||||||    
T  29344703 tatatatatagagggcatttcaagtgaaagggcttttaaaatgagaggtgagagggttaaatgctaaccattagattaaattaaattaatatcaacggtt 29344604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 22046415 - 22046476
Alignment:
Q  137 tatatatatagagggcatatcaaatgagagga-ctcttaaaatgagagatgagaggactaaa 197  Q
    |||||||||| |||||||||||| ||||||||  | ||||||||||||||||||||| ||||    
T  22046415 tatatatatatagggcatatcaagtgagaggagttgttaaaatgagagatgagaggaataaa 22046476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 22058823 - 22058884
Alignment:
Q  137 tatatatatagagggcatatcaaatgagagga-ctcttaaaatgagagatgagaggactaaa 197  Q
    |||||||||| |||||||||||| ||||||||  | ||||||||||||||||||||| ||||    
T  22058823 tatatatatatagggcatatcaagtgagaggagttgttaaaatgagagatgagaggaataaa 22058884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 32260137 - 32260173
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactctt 173  Q
    |||||||||||||| ||||||||||||||||||||||    
T  32260137 tatatatatagaggccatatcaaatgagaggactctt 32260173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 15997594 - 15997548
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagag 183  Q
    |||||||||||||||||| ||||||||||||| | || |||||||||    
T  15997594 tatatatatagagggcatttcaaatgagaggagtttttaaatgagag 15997548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 30321294 - 30321350
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggact--cttaaaatgagagatgagagga 192  Q
    ||||||||||||||||||||||| |||||||| |  ||| ||||||||||||||||||    
T  30321294 tatatatatagagggcatatcaagtgagaggagtaactt-aaatgagagatgagagga 30321350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 1859852 - 1859791
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggac-tcttaaaatgagagatgagaggactaaa 197  Q
    |||||||||||  | |||||||| ||||||||| | ||||||||||||||||||||| ||||    
T  1859852 tatatatatagtagacatatcaagtgagaggacattttaaaatgagagatgagaggaataaa 1859791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 18970715 - 18970658
Alignment:
Q  137 tatatatata-gagggcatatcaaatgagaggactcttaaaatgaga-gatgagagga 192  Q
    |||||||||| |||||||| |||||| |||||||| ||||||||||| ||||||||||    
T  18970715 tatatatatatgagggcatttcaaataagaggacttttaaaatgagaggatgagagga 18970658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 22047267 - 22047206
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactc-ttaaaatgagagatgagaggactaaa 197  Q
    |||||||||| ||| |||||||| |||||||| |  ||||||||||||||||||||| ||||    
T  22047267 tatatatatataggacatatcaagtgagaggaattgttaaaatgagagatgagaggaataaa 22047206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 154 - 190
Target Start/End: Complemental strand, 7588233 - 7588197
Alignment:
Q  154 tatcaaatgagaggactcttaaaatgagagatgagag 190  Q
    ||||||||||||||| | |||||||||||||||||||    
T  7588233 tatcaaatgagaggagttttaaaatgagagatgagag 7588197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 137 - 232
Target Start/End: Original strand, 18861880 - 18861975
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagagatgagaggactaaatgctagccattggattgaattggattaatatcaac 232  Q
    |||||||||| | ||||| |||| |||||||||| |||||||||||| |||||||  ||||||||| ||||| |||| |||| |||||||||||||    
T  18861880 tatatatatatatggcatttcaagtgagaggacttttaaaatgagaggtgagagggttaaatgctaaccattagattaaattagattaatatcaac 18861975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 17105364 - 17105426
Alignment:
Q  147 gagggcatatcaaatgagaggactcttaaaatgagagatgagaggactaaatgctagccattg 209  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||  ||||| ||| ||||||    
T  17105364 gagggaatatcaaatgagaggactcttaaaatgaaagatgagagggttaaatcctaaccattg 17105426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 33574085 - 33574039
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagag 183  Q
    |||||||||| |||||||||||| |||||||||| ||||||||||||    
T  33574085 tatatatatatagggcatatcaagtgagaggacttttaaaatgagag 33574039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 35424255 - 35424301
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagag 183  Q
    ||||||||| |||||||| ||||||||||||||| ||||||||||||    
T  35424255 tatatatattgagggcatttcaaatgagaggacttttaaaatgagag 35424301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 12255123 - 12255177
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagagatgagagg 191  Q
    |||||||||| ||||  ||||||||||||||||| ||| | ||||||||||||||    
T  12255123 tatatatatatagggtgtatcaaatgagaggacttttatagtgagagatgagagg 12255177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 24872670 - 24872617
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagagatgagag 190  Q
    |||||||||||||||  ||||||||||||||||  ||| |||||||| ||||||    
T  24872670 tatatatatagagggtgtatcaaatgagaggacatttataatgagaggtgagag 24872617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 25746838 - 25746785
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagagatgagag 190  Q
    ||||||||||| ||   ||||||||||||||| | |||||||||||||||||||    
T  25746838 tatatatataggggatgtatcaaatgagaggagttttaaaatgagagatgagag 25746785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 17277816 - 17277760
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagag-atgagagga 192  Q
    |||||||||||||||  ||||||||||||||| | ||| |||||||| |||||||||    
T  17277816 tatatatatagagggtgtatcaaatgagaggagtgttataatgagagaatgagagga 17277760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 22778234 - 22778290
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggac-tcttaaaatgagagatgagagga 192  Q
    |||||||||| | | |||||||| ||||||||| ||||| |||||||||||||||||    
T  22778234 tatatatatatatgtcatatcaagtgagaggacatcttataatgagagatgagagga 22778290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 27365694 - 27365638
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggac-tcttaaaatgagagatgagagga 192  Q
    |||||||||||||||  |||||| ||||||||| | ||| |||||||||||||||||    
T  27365694 tatatatatagagggtgtatcaagtgagaggacattttataatgagagatgagagga 27365638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 29881567 - 29881666
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagagatgagaggactaaatgctagccattggattgaattggattaatatcaacggtt 236  Q
    |||||||||| ||||||| |||| ||||||| || ||||||| |||| || ||||| ||||||||| ||||| |||| |||| |||||||||||||||||    
T  29881567 tatatatatatagggcatttcaagtgagagggcttttaaaataagaggtgggaggattaaatgctaaccattagattaaattagattaatatcaacggtt 29881666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 56295223 - 56295278
Alignment:
Q  137 tatatatatagagggcatatcaaatgagagga-ctcttaaaatgagagatgagagg 191  Q
    |||||||||| |||||||||||| |||||||| || ||||||||||||||||||||    
T  56295223 tatatatatatagggcatatcaagtgagaggaccttttaaaatgagagatgagagg 56295278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 1865487 - 1865541
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagagatgagagg 191  Q
    |||||||||| ||||  ||||||||||||| ||| ||||||||||||||||||||    
T  1865487 tatatatatatagggtgtatcaaatgagagcactgttaaaatgagagatgagagg 1865541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 6050814 - 6050753
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagagatgagaggactaaat 198  Q
    |||||||||||||| ||||||||||||||||| | |||   | |||||||||||||||||||    
T  6050814 tatatatatagaggacatatcaaatgagaggatttttatggtaagagatgagaggactaaat 6050753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 11380268 - 11380321
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagagatgagag 190  Q
    |||||||||| ||| |||||||| |||||||||| ||| |||||||||||||||    
T  11380268 tatatatatataggacatatcaagtgagaggacttttataatgagagatgagag 11380321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 55000684 - 55000629
Alignment:
Q  137 tatatatatagagggcatatcaaatgagagga-ctcttaaaatgagagatgagagg 191  Q
    |||||||||| |||||||||||| ||| |||| || ||||||||||||||||||||    
T  55000684 tatatatatatagggcatatcaagtgaaaggaccttttaaaatgagagatgagagg 55000629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 17736570 - 17736616
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagag 183  Q
    |||||||||||||| ||| ||||||||||||| | ||||||||||||    
T  17736570 tatatatatagaggacatttcaaatgagaggagttttaaaatgagag 17736616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 6049813 - 6049846
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggact 170  Q
    ||||||||||||||||||||||| ||||||||||    
T  6049813 tatatatatagagggcatatcaagtgagaggact 6049846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 50182445 - 50182506
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagagatgagaggactaaat 198  Q
    |||||||||| | | |||||||| |||||| ||| | ||||||||||||||||||| |||||    
T  50182445 tatatatatatatgacatatcaagtgagagcactttcaaaatgagagatgagaggaataaat 50182506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 50303427 - 50303374
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagagatgagag 190  Q
    ||||||||||| ||   ||||||||||||||| | |||||||||||||||||||    
T  50303427 tatatatataggggatgtatcaaatgagaggagttttaaaatgagagatgagag 50303374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 165
Target Start/End: Original strand, 56028651 - 56028679
Alignment:
Q  137 tatatatatagagggcatatcaaatgaga 165  Q
    |||||||||||||||||||||||||||||    
T  56028651 tatatatatagagggcatatcaaatgaga 56028679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 13913520 - 13913465
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggac-tcttaaaatgagagatgagagg 191  Q
    |||||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||    
T  13913520 tatatatatatagggcatatcaagtgagaggacatcttataatgagagatgagagg 13913465  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 3322899 - 3322985
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggac-tcttaaaatgagagatgagaggactaaatgctagccattggattgaattggat 222  Q
    |||||||||| | |||||||||| ||||||||| | |||||||||||||||||||   |||||   |||||||||||| ||||||||    
T  3322899 tatatatatatatggcatatcaagtgagaggacattttaaaatgagagatgagagagttaaattagagccattggattaaattggat 3322985  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 44356802 - 44356863
Alignment:
Q  137 tatatatatagagggcatatcaaatgagagga-ctcttaaaatgagagatgagaggactaaa 197  Q
    |||||||||| |||||||||||| ||||||||  | ||||||||||||||||||||| ||||    
T  44356802 tatatatatatagggcatatcaagtgagaggagttgttaaaatgagagatgagaggaataaa 44356863  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 12332102 - 12332056
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagag 183  Q
    |||||||||||||||||| |||||| |||||| | ||||||||||||    
T  12332102 tatatatatagagggcatttcaaataagaggagttttaaaatgagag 12332056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 44357654 - 44357593
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactc-ttaaaatgagagatgagaggactaaa 197  Q
    |||||||||| ||| |||||||| |||||||| |  ||||||||||||||||||||| ||||    
T  44357654 tatatatatataggacatatcaagtgagaggaattgttaaaatgagagatgagaggaataaa 44357593  T

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Target: scaffold1370 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold1370
Description:

Target: scaffold1370; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 972 - 918
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagagatgagagg 191  Q
    |||||||||||||||  |||||| |||||||| | ||||||||||||||||||||    
T  972 tatatatatagagggtgtatcaagtgagaggaattttaaaatgagagatgagagg 918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1370; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 191 - 247
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgaga-gatgagagga 192  Q
    |||||||||| ||||||| ||||||||||||||| || |||||||| ||||||||||    
T  191 tatatatatatagggcatttcaaatgagaggactttttaaatgagaggatgagagga 247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 16723672 - 16723718
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagag 183  Q
    |||||||||| ||||||| ||||||||||||||| ||||||||||||    
T  16723672 tatatatatatagggcatttcaaatgagaggacttttaaaatgagag 16723718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 236
Target Start/End: Original strand, 25229604 - 25229694
Alignment:
Q  146 agagggcatatcaaatgagaggactcttaaaatgagagatgagaggactaaatgctagccattggattgaattggattaatatcaacggtt 236  Q
    ||||||||| |||| ||| | | || |||||||||||| ||||||   ||||||||| ||||| |||| |||| |||||||||||||||||    
T  25229604 agagggcatttcaagtgaaatggcttttaaaatgagaggtgagagagttaaatgctaaccattagattaaattagattaatatcaacggtt 25229694  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 36228494 - 36228549
Alignment:
Q  137 tatatatatagagggcatatcaaatgagagga-ctcttaaaatgagagatgagagg 191  Q
    |||||||||| |||||||||||| | |||||| || ||||||||||||||||||||    
T  36228494 tatatatatatagggcatatcaagtaagaggaccttttaaaatgagagatgagagg 36228549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 141 - 183
Target Start/End: Complemental strand, 28540422 - 28540380
Alignment:
Q  141 tatatagagggcatatcaaatgagaggactcttaaaatgagag 183  Q
    |||||| ||||||| ||||||||||||||| ||||||||||||    
T  28540422 tatatatagggcatttcaaatgagaggacttttaaaatgagag 28540380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 20105134 - 20105101
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggact 170  Q
    ||||||||||||||||||||||| ||||||||||    
T  20105134 tatatatatagagggcatatcaagtgagaggact 20105101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 36698668 - 36698631
Alignment:
Q  156 tcaaatgagaggac-tcttaaaatgagagatgagagga 192  Q
    |||||||||||||| |||||||||||||||||||||||    
T  36698668 tcaaatgagaggacgtcttaaaatgagagatgagagga 36698631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 19068454 - 19068500
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagag 183  Q
    |||||||||||||||||| ||||||||||||||| || |||||||||    
T  19068454 tatatatatagagggcatttcaaatgagaggactttttaaatgagag 19068500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 41115549 - 41115489
Alignment:
Q  138 atatatatagagggcatatcaaatgagagga-ctcttaaaatgagagatgagaggactaaa 197  Q
    ||||||||| |||||||||||| ||||||||  | ||||||||||||||||||||| ||||    
T  41115549 atatatatatagggcatatcaagtgagaggagttgttaaaatgagagatgagaggaataaa 41115489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 167
Target Start/End: Original strand, 3772585 - 3772615
Alignment:
Q  137 tatatatatagagggcatatcaaatgagagg 167  Q
    |||||||||||||||||||||||||||||||    
T  3772585 tatatatatagagggcatatcaaatgagagg 3772615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 138542 - 138595
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgagagatgagag 190  Q
    |||||||||| ||||  ||||||||||||||| | |||||||||||||||||||    
T  138542 tatatatatatagggtgtatcaaatgagaggagtgttaaaatgagagatgagag 138595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 17598 - 17542
Alignment:
Q  137 tatatatatagagggcatatcaaatgagaggactcttaaaatgaga-gatgagagga 192  Q
    |||||||||||||||||| ||||||||||||| | || |||||||| ||||||||||    
T  17598 tatatatatagagggcatttcaaatgagaggattttttaaatgagaggatgagagga 17542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 15002 - 14946
Alignment:
Q  137 tatatatatagagggcatatcaaatgagagga-ctcttaaaatgagagatgagagga 192  Q
    |||||||||| |||||||||||| |||||| | || |||||||||||||||||||||    
T  15002 tatatatatatagggcatatcaagtgagagcaccttttaaaatgagagatgagagga 14946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 8498 - 8441
Alignment:
Q  138 atatatatagagggcatatcaaatgagaggactcttaaaatgaga-gatgagaggact 194  Q
    ||||||||||||||||| |||| |||||  |||||| |||||||| ||||||||||||    
T  8498 atatatatagagggcatttcaagtgagattactctttaaatgagaggatgagaggact 8441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 150593 - 150629
Alignment:
Q  156 tcaaatgagaggactcttaaaatgagagatgagagga 192  Q
    |||| |||||||||| |||||||||||||||||||||    
T  150593 tcaagtgagaggacttttaaaatgagagatgagagga 150629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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