View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5067-Insertion-9 (Length: 494)
Name: NF5067-Insertion-9
Description: NF5067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5067-Insertion-9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 8 - 494
Target Start/End: Complemental strand, 34682071 - 34681571
Alignment:
| Q |
8 |
caaaatcccgcattccttgcagctgattaatccaactccagaa------gcctcctatcaattcaagacagcaaccaactcaagacagcaacacagggac |
101 |
Q |
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| T |
34682071 |
caaaatcccgcattccttgcagctgattaatccaactccagaaccagaagcctcctatcaattcaaaacagcaaccaactcaagacagcaacacagggac |
34681972 |
T |
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| Q |
102 |
tagaacggatgatgcaaatttgtgaaaatagttcctaacttcttgtgatagctgatgtatgtatgcaccgaatttgttgaaactcgagctcctactatag |
201 |
Q |
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| T |
34681971 |
tagaacggatgacacaaatttgtgaaaatagttcctaacttcttgtgatagctgatgtatgtatgcaccgaatttgttgaaactcgagctcccacgatag |
34681872 |
T |
|
| Q |
202 |
aaagtccctgcg--------atagacaccaaaacagaaccaacacggatgctccacagaaacagaagagcgcagatccaaaaacaaaacttgtcgatctt |
293 |
Q |
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| T |
34681871 |
aaagtccctgcggccatcaaatagacaccaaaacagaaccaacacgaatgctccacagaaacagaagagcgcagatccaaaaacaaaacttgtcgatctt |
34681772 |
T |
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| Q |
294 |
gatcgaataattcttcaagatagaactttatattcatctgctaccttttcccatttaatagcagcctgtttaaatacctttgcattcctagcattccaaa |
393 |
Q |
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| T |
34681771 |
gattgaataattcttcaagatagaactttatattcatctgctcccttttcccatttaatagcagcctgtttaaatacctttgcattcctagcattccaaa |
34681672 |
T |
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| Q |
394 |
tggaagagataatagagaccaatatcactcccaacctctcacagacggttttacctcctgcaactagacctttgaacaaaatgagacgctcaaatcctcc |
493 |
Q |
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| T |
34681671 |
tggaagagataatggagaccaatatcactcccaacctctcacaaacggttttacctcctgcaactagacctttgaacaaaatgagacgctcaaatcctcc |
34681572 |
T |
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| Q |
494 |
t |
494 |
Q |
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| T |
34681571 |
t |
34681571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 3e-40; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 278 - 490
Target Start/End: Complemental strand, 10831464 - 10831252
Alignment:
| Q |
278 |
aaaacttgtcgatcttgatcgaataattcttcaagatagaactttatattcatctgctaccttttcccatttaatagcagcctgtttaaatacctttgca |
377 |
Q |
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||||| ||| |||||| ||||||||| ||| ||||||||||||||||||||| | || ||||||||||| |||||| ||| ||||| ||| ||| |||| |
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| T |
10831464 |
aaaacctgtagatcttaatcgaataactctccaagatagaactttatattcacccgcaaccttttcccaattaataccagtctgttaaaagaccattgcg |
10831365 |
T |
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| Q |
378 |
ttcctagcattccaaatggaagagataatagagaccaatatcactcccaacctctcacagacggttttacctcctgcaactagacctttgaacaaaatga |
477 |
Q |
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|||||||||||||| |||||||||||||| |||||| | || || |||| ||||||| ||| |||||||||| ||||| | ||||||||||||| | | |
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| T |
10831364 |
ttcctagcattccagatggaagagataattgagacctagattacacccagcctctcaagaacgtttttacctccagcaaccaaacctttgaacaaattta |
10831265 |
T |
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| Q |
478 |
gacgctcaaatcc |
490 |
Q |
| |
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| T |
10831264 |
gatgctcaaatcc |
10831252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 386
Target Start/End: Complemental strand, 12201712 - 12201604
Alignment:
| Q |
278 |
aaaacttgtcgatcttgatcgaataattcttcaagatagaactttatattcatctgctaccttttcccatttaatagcagcctgtttaaatacctttgca |
377 |
Q |
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||||| |||| ||||| ||||||| ||||| |||||||||||||||||||||||||| ||| | ||||| | |||| |||||||| |||| ||| ||| |
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| T |
12201712 |
aaaacctgtcaatctttatcgaatgattctccaagatagaactttatattcatctgcaaccctctcccaatcaatatcagcctgtgtaaaaaccattgtg |
12201613 |
T |
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| Q |
378 |
ttcctagca |
386 |
Q |
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||||||||| |
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| T |
12201612 |
ttcctagca |
12201604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 406
Target Start/End: Complemental strand, 40754862 - 40754734
Alignment:
| Q |
278 |
aaaacttgtcgatcttgatcgaataattcttcaagatagaactttatattcatctgctaccttttcccatttaatagcagcctgtttaaatacctttgca |
377 |
Q |
| |
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||||| ||||| ||||||| |||| ||||| ||||||| |||||||||||||||||| || | ||||| | |||| |||||| | |||| ||| |||| |
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| T |
40754862 |
aaaacctgtcggtcttgattgaatgattctccaagatataactttatattcatctgcatccctctcccaatcaatatcagcctttgtaaaaaccattgcg |
40754763 |
T |
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| Q |
378 |
ttcctagcattccaaatggaagagataat |
406 |
Q |
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| T |
40754762 |
ttccaagcattccaaatggacgatataat |
40754734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 214 - 283
Target Start/End: Complemental strand, 10831628 - 10831560
Alignment:
| Q |
214 |
atagacaccaaaacagaaccaacacggatgctccacagaaacagaagagcgcagatccaaaaacaaaact |
283 |
Q |
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|||||| ||||||||||||||||| ||||| ||||||| || ||||||| |||| |||||||||||||| |
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| T |
10831628 |
atagactccaaaacagaaccaacatggatgttccacag-aagagaagagtgcagcaccaaaaacaaaact |
10831560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 469
Target Start/End: Complemental strand, 34276172 - 34276083
Alignment:
| Q |
380 |
cctagcattccaaatggaagagataatagagaccaatatcactcccaacctctcacagacggttttacctcctgcaactagacctttgaa |
469 |
Q |
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|||||| |||||||||||| | ||||| |||||| | ||||| ||||||||||| || || ||||||||| ||||| |||| |||||| |
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| T |
34276172 |
cctagctttccaaatggaatatataattgagacccagatcacacccaacctctcccaaacatttttacctcttgcaatcagacatttgaa |
34276083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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