View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5067_high_10 (Length: 426)
Name: NF5067_high_10
Description: NF5067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5067_high_10 |
 | |
|
| [»] scaffold0115 (1 HSPs) |
| | |
|
| [»] scaffold0064 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 19 - 415
Target Start/End: Complemental strand, 21087948 - 21087552
Alignment:
| Q |
19 |
aacaattgtttacataagtataaacccgagaagatgaagacgacgatgaaccacaaatttcaatgggaagaggaagggtttcagcatcaagctttttcca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21087948 |
aacaattgtttacataagtataaacccgagaagacgaagacgacgatgaaccacaaatttcaatgggaagaggaagggtttcagcatcaagctttttcca |
21087849 |
T |
|
| Q |
119 |
agagtttgaattaagactatataactcacctgtccaataacctttttgtctttcatctgtttcctttaaccaaagatctttaagcacaataactttatag |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21087848 |
agagtttgaattaagactatataactcacctgtccaataccctttttgtctttcatctgtttcctttaaccaaagatctttaagcacaataactttatag |
21087749 |
T |
|
| Q |
219 |
tcattagttttaggatcaaaaccaaaactagcataatcagtgagagaataaatgccatttgaatcagttaaatgggattcaggtaaagccttgaattgtt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
21087748 |
tcattagttttaggatcaaaaccaaaactagcataatcagtgagagaataaatgccatttgaatctgttaaatgggattcaggtaaagccttgaactgtt |
21087649 |
T |
|
| Q |
319 |
gcaaagaagcattcatcaagacatttggatttccttgaagtaaatatataccattgcatggtcccataatttcagaccaatatttatgttcagaatt |
415 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21087648 |
gtaaagaagcattcatcaagacatttggatttccttgaagtaagtatataccattgcatggtcccataatttcagaccaatatttatgttcagaatt |
21087552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 63 - 417
Target Start/End: Complemental strand, 16367 - 16013
Alignment:
| Q |
63 |
gatgaaccacaaatttcaatgggaagaggaagggtttcagcatcaagctttttccaagagtttgaattaagactatataactcacctgtccaataacctt |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||||| ||| |||||||||| || ||| |||| ||||||||| |||||||| |||||| |
|
|
| T |
16367 |
gatgaaccacaaatttcaatgggaagaggaagagttttagcatcaagttttctccaagagttagacttatgactgtataactcagctgtccaaaaacctt |
16268 |
T |
|
| Q |
163 |
tttgtctttcatctgtttcctttaaccaaagatctttaagcacaataactttatagtcattagttttaggatcaaaaccaaaactagcataatcagtgag |
262 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||| |||| || |||||||||||||||| |||| ||||||||||||||||||||||||||||| || |
|
|
| T |
16267 |
tttgtctatcatctgtttcctttaaccaaatatctttgagcataacaactttatagtcattacttttgggatcaaaaccaaaactagcataatcagtaag |
16168 |
T |
|
| Q |
263 |
agaataaatgccatttgaatcagttaaatgggattcaggtaaagccttgaattgttgcaaagaagcattcatcaagacatttggatttccttgaagtaaa |
362 |
Q |
| |
|
||||||||| ||||||||||| || ||||||||||||||||||| |||||| ||| | ||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
16167 |
agaataaataccatttgaatctgtcaaatgggattcaggtaaagacttgaactgtcttagagaagggttcatcaagacatttggatttccttgaaggaag |
16068 |
T |
|
| Q |
363 |
tatataccattgcatggtcccataatttcagaccaatatttatgttcagaattat |
417 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
16067 |
tatatgccattgcatggtcccatgatttcagaccaatatttgtgatcagaattat |
16013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 136; Significance: 8e-71; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 60 - 403
Target Start/End: Complemental strand, 55873 - 55530
Alignment:
| Q |
60 |
gacgatgaaccacaaatttcaatgggaagaggaagggtttcagcatcaagctttttccaagagtttgaattaagactatataactcacctgtccaataac |
159 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||| | | || ||||||||| |||||||||| ||||||||||||||||||||| ||||||||| | |
|
|
| T |
55873 |
gacgatgaacctgaaatttcaataggaagaggaagagctgcattttcaagctttctccaagagttagaattaagactatataactcagctgtccaatgcc |
55774 |
T |
|
| Q |
160 |
ctttttgtctttcatctgtttcctttaaccaaagatctttaagcacaataactttatagtcattagttttaggatcaaaaccaaaactagcataatcagt |
259 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| ||| | ||||||| ||||||||||||||||||||| || || | ||||| | |||| ||||||| |
|
|
| T |
55773 |
ctttttgtctttcatctgttttctttagccaaatgtctcttagcacaacaactttatagtcattagttttcgggtcgagcccaaatccagcaaaatcagt |
55674 |
T |
|
| Q |
260 |
gagagaataaatgccatttgaatcagttaaatgggattcaggtaaagccttgaattgttgcaaagaagcattcatcaagacatttggatttccttgaagt |
359 |
Q |
| |
|
|||||||||| || |||| |||| || ||||| |||||||| ||||||||||| ||| |||||||| ||||||| || |||||||||||||||||| |
|
|
| T |
55673 |
gagagaataattgagatttaaatctgtcaaatgagattcaggcaaagccttgaactgtctcaaagaagggttcatcatgagatttggatttccttgaaga |
55574 |
T |
|
| Q |
360 |
aaatatataccattgcatggtcccataatttcagaccaatattt |
403 |
Q |
| |
|
|| || || ||||| ||||| ||||| ||||||| ||||||||| |
|
|
| T |
55573 |
aagtaaatgccattacatggacccatgatttcagtccaatattt |
55530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 26813407 - 26813346
Alignment:
| Q |
186 |
aaccaaagatctttaagcacaataactttatagtcattagtttt-aggatcaaaaccaaaac |
246 |
Q |
| |
|
||||||| |||| ||||||||| || |||||||||||||||||| || ||||||||||||| |
|
|
| T |
26813407 |
aaccaaatatctctaagcacaacaagtttatagtcattagttttgggggtcaaaaccaaaac |
26813346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University