View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5067_high_24 (Length: 246)
Name: NF5067_high_24
Description: NF5067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5067_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 7 - 237
Target Start/End: Original strand, 32716807 - 32717037
Alignment:
| Q |
7 |
gttctccgcgtcgttgaatttgaagagagatgggtgagaggaaggttttgaacaagtattacccgccagatttcgatcctgccaagcttcctcgaggaaa |
106 |
Q |
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| T |
32716807 |
gttctccgcgtcgttgaatttgaagagagatgggtgagaggaaggttttgaacaagtattacccaccggatttcgatcctgccaagcttcctcgaggaaa |
32716906 |
T |
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| Q |
107 |
aaagaccaaacaaatccctgttcgtcatatgctttcgatgaccattcgatgcaacacttgcggtaattttatgtacaaaggtaccaagttaaactccaga |
206 |
Q |
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| T |
32716907 |
aaagaccaaacaaatccctgttcgtcatatgctttcgatgaccattcgatgcaacacttgcggtaattttatgtacaaaggtaccaagttaaactccaga |
32717006 |
T |
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| Q |
207 |
aaagaagttgtcgaaggcgagacatatcttg |
237 |
Q |
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| T |
32717007 |
aaagaagttgtcgaaggcgagacatatcttg |
32717037 |
T |
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Back To:
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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 213
Target Start/End: Original strand, 1835757 - 1835948
Alignment:
| Q |
28 |
gaagagagatgggtgagaggaaggttttgaacaagtattacccgccagatttcgatcctgccaagcttcctcgaggaaaaaagaccaaa-------caaa |
120 |
Q |
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| T |
1835757 |
gaagaaagatgggtgaaaggaaggttttgaacaagtattacccaccggatttcgatccggctaagcttcctcg-ggtaagaaggccggagaatctgcaaa |
1835855 |
T |
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| Q |
121 |
tccctgttcgtcatatgctttcgatgaccattcgatgcaacacttgcggtaattttatgtacaaaggtaccaagttaaactccagaaaagaag |
213 |
Q |
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| T |
1835856 |
tcaatgttcgtatgatgcttccgatgagcattcgatgcaatacctgcgggaattacatttataaaggaaccaagttcaactccagaaaagaag |
1835948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 213
Target Start/End: Complemental strand, 29824068 - 29823883
Alignment:
| Q |
34 |
agatgggtgagaggaaggttttgaacaagtattacccgccagatttcgatcctgccaagcttcctcgaggaaaaaagaccaa------acaaatccctgt |
127 |
Q |
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| T |
29824068 |
agatgggtgaaaggaaagttttgaacaagtattacccaccggatttcgatccggccaagcttcctcgtgtaagaaggccgaagaatctgcaaatcaaggt |
29823969 |
T |
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| Q |
128 |
tcgtcatatgctttcgatgaccattcgatgcaacacttgcggtaattttatgtacaaaggtaccaagttaaactccagaaaagaag |
213 |
Q |
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| T |
29823968 |
tcgtatgatgcttccgatgagcattcgatgcaatacgtgcggaaattacatttataaaggtaccaagttcaactccagaaaagaag |
29823883 |
T |
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