View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5067_high_4 (Length: 569)

Name: NF5067_high_4
Description: NF5067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5067_high_4
NF5067_high_4
[»] chr4 (7 HSPs)
chr4 (17-257)||(13615249-13615490)
chr4 (389-439)||(14586672-14586722)
chr4 (389-439)||(6199548-6199598)
chr4 (444-486)||(13615215-13615257)
chr4 (389-439)||(34502578-34502628)
chr4 (444-478)||(47789510-47789544)
chr4 (197-234)||(39276338-39276375)
[»] chr1 (7 HSPs)
chr1 (257-440)||(13771310-13771492)
chr1 (444-487)||(10518265-10518308)
chr1 (196-249)||(7583417-7583470)
chr1 (444-487)||(20791963-20792006)
chr1 (24-98)||(7583209-7583282)
chr1 (444-478)||(22593647-22593681)
chr1 (450-487)||(7097735-7097772)
[»] scaffold0005 (1 HSPs)
scaffold0005 (389-439)||(230652-230702)
[»] chr5 (5 HSPs)
chr5 (389-439)||(1850918-1850968)
chr5 (444-488)||(6462392-6462436)
chr5 (26-99)||(17981491-17981563)
chr5 (444-488)||(4283135-4283179)
chr5 (444-488)||(13838869-13838913)
[»] chr3 (1 HSPs)
chr3 (444-487)||(38684763-38684806)
[»] chr7 (1 HSPs)
chr7 (445-487)||(29234695-29234737)
[»] chr2 (1 HSPs)
chr2 (450-488)||(27679114-27679152)
[»] chr8 (3 HSPs)
chr8 (174-235)||(27316720-27316781)
chr8 (449-478)||(28444783-28444812)
chr8 (384-440)||(6841992-6842048)


Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 257
Target Start/End: Complemental strand, 13615490 - 13615249
Alignment:
Q  17 ggaagatgggaagaccgggacaagatagagcatattccaaaactaaacattcgatagaatgaaaaaagcagagatgtttgaagaggattggatcaagttg 116  Q
    |||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13615490 ggaacatgggaagactgggacaagatagcgcatattccaaaactaaacattcgatagaatgaaaaaagcagagatgtttgaaaaggattggatcaagttg 13615391  T
Q  117 ttccctttt-cttcttccatcaccattgccgctcctttcggttgttgctcatattttgtatgattagaaaaagtcttttagtaactgtcattttctcacg 215  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13615390 ttccctttttcttcttccatcaccattgccgctcctttcggttgttgctcatattttgtatgattagaaaaagtcgtttagtaactgtcattttctcacg 13615291  T
Q  216 agtttataccttatttttatgatattattgtgtttttcgata 257  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13615290 agtttataccttatttttatgatattattgtgtttttcgata 13615249  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 389 - 439
Target Start/End: Original strand, 14586672 - 14586722
Alignment:
Q  389 gtagtactattcttgtttttcgttgtgaaagtattcgtggtaaaagacatt 439  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14586672 gtagtactattcttgtttttcgttgtgaaagtattcgtggtaaaaggcatt 14586722  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 389 - 439
Target Start/End: Complemental strand, 6199598 - 6199548
Alignment:
Q  389 gtagtactattcttgtttttcgttgtgaaagtattcgtggtaaaagacatt 439  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  6199598 gtagtactattcttgtttttcgttgttaaagtattcgtggtaaaaggcatt 6199548  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 444 - 486
Target Start/End: Complemental strand, 13615257 - 13615215
Alignment:
Q  444 ttttcgataagctaatttaagtagcttatagcttaaagcttat 486  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  13615257 ttttcgataagctaatttaagtagcttatagcttaaagcttat 13615215  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 389 - 439
Target Start/End: Complemental strand, 34502628 - 34502578
Alignment:
Q  389 gtagtactattcttgtttttcgttgtgaaagtattcgtggtaaaagacatt 439  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  34502628 gtagtactattcttgtttttcgttgtaaaagtattcgtggtaaaaggcatt 34502578  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 478
Target Start/End: Complemental strand, 47789544 - 47789510
Alignment:
Q  444 ttttcgataagctaatttaagtagcttatagctta 478  Q
    ||||||||||||||||| |||||||||||||||||    
T  47789544 ttttcgataagctaattcaagtagcttatagctta 47789510  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 39276338 - 39276375
Alignment:
Q  197 taactgtcattttctcacgagtttataccttattttta 234  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  39276338 taactgtcattttctcacgagcttataacttattttta 39276375  T

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Target: chr1 (Bit Score: 118; Significance: 6e-60; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 257 - 440
Target Start/End: Complemental strand, 13771492 - 13771310
Alignment:
Q  257 agagtggtgctatttaccacgaaacaggatttcacgggattcacgaaccttcacaatttaactataataaacatccttttgatattnnnnnnnnnnncat 356  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||    
T  13771492 agagtggtgctatttaccacgaaacaagatttcacgggattcacgaaccttcacaatttaactataataaacatccttttgatatt-aaaaaaaaaacat 13771394  T
Q  357 aaaagacattttttgcggaagaaacggcgagagtagtactattcttgtttttcgttgtgaaagtattcgtggtaaaagacattt 440  Q
    ||||||||||||| || ||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  13771393 aaaagacatttttggcagaaaaaacagcgagagtagtactatttttgtttttcgttgtgaaagtattcgtggtaaaaggcattt 13771310  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 444 - 487
Target Start/End: Original strand, 10518265 - 10518308
Alignment:
Q  444 ttttcgataagctaatttaagtagcttatagcttaaagcttata 487  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  10518265 tttttgataagctaatttaagtagcttatagcttaaagcttata 10518308  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 7583417 - 7583470
Alignment:
Q  196 gtaactgtcattttctcacgagtttataccttatttttatgatattattgtgtt 249  Q
    |||||||||||||||||||||| |||||  ||||||||||||  ||||||||||    
T  7583417 gtaactgtcattttctcacgagcttatagtttatttttatgagcttattgtgtt 7583470  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 487
Target Start/End: Complemental strand, 20792006 - 20791963
Alignment:
Q  444 ttttcgataagctaatttaagtagcttatagcttaaagcttata 487  Q
    |||| |||||||||||| ||||||||||||||||||| ||||||    
T  20792006 tttttgataagctaattcaagtagcttatagcttaaatcttata 20791963  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 7583209 - 7583282
Alignment:
Q  24 gggaagaccgggacaagatagagcatattccaaaactaaacattcgatagaatgaaaaaagcagagatgtttgaa 98  Q
    |||||||| || ||||||||| ||||||| |||||||  ||||| | ||||||||| || |||||||||||||||    
T  7583209 gggaagactggaacaagatagcgcatatttcaaaacttgacattagttagaatgaagaa-gcagagatgtttgaa 7583282  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 478
Target Start/End: Complemental strand, 22593681 - 22593647
Alignment:
Q  444 ttttcgataagctaatttaagtagcttatagctta 478  Q
    ||||||||||||||||| |||||||||||||||||    
T  22593681 ttttcgataagctaattcaagtagcttatagctta 22593647  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 487
Target Start/End: Complemental strand, 7097772 - 7097735
Alignment:
Q  450 ataagctaatttaagtagcttatagcttaaagcttata 487  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  7097772 ataagctaattcaagtatcttatagcttaaagcttata 7097735  T

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Target: scaffold0005 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 389 - 439
Target Start/End: Complemental strand, 230702 - 230652
Alignment:
Q  389 gtagtactattcttgtttttcgttgtgaaagtattcgtggtaaaagacatt 439  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  230702 gtagtactattcttgtttttcgttgtgaaagtattcgtggtaaaaggcatt 230652  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 389 - 439
Target Start/End: Complemental strand, 1850968 - 1850918
Alignment:
Q  389 gtagtactattcttgtttttcgttgtgaaagtattcgtggtaaaagacatt 439  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  1850968 gtagtactattcttgtttttcgttgtaaaagtattcgtggtaaaaggcatt 1850918  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 488
Target Start/End: Complemental strand, 6462436 - 6462392
Alignment:
Q  444 ttttcgataagctaatttaagtagcttatagcttaaagcttatag 488  Q
    |||| |||||||||||| |||||||||||| ||||||||||||||    
T  6462436 tttttgataagctaattcaagtagcttatatcttaaagcttatag 6462392  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 17981563 - 17981491
Alignment:
Q  26 gaagaccgggacaagatagagcatattccaaaactaaacattcgatagaatgaaaaaagcagagatgtttgaag 99  Q
    |||||| ||||||||||||  ||||||||| ||||  ||||||  ||||||| | |||||||||||||||||||    
T  17981563 gaagactgggacaagatagcccatattccagaactgcacattccttagaatg-agaaagcagagatgtttgaag 17981491  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 488
Target Start/End: Original strand, 4283135 - 4283179
Alignment:
Q  444 ttttcgataagctaatttaagtagcttatagcttaaagcttatag 488  Q
    |||| |||||||||||| || |||||||||||||||| |||||||    
T  4283135 tttttgataagctaattcaaatagcttatagcttaaaccttatag 4283179  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 488
Target Start/End: Complemental strand, 13838913 - 13838869
Alignment:
Q  444 ttttcgataagctaatttaagtagcttatagcttaaagcttatag 488  Q
    |||| ||| |||||||| ||||||||||||||||||| |||||||    
T  13838913 tttttgattagctaattcaagtagcttatagcttaaaacttatag 13838869  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 444 - 487
Target Start/End: Complemental strand, 38684806 - 38684763
Alignment:
Q  444 ttttcgataagctaatttaagtagcttatagcttaaagcttata 487  Q
    |||| |||||||||||| ||||||||||||||||||||||||||    
T  38684806 tttttgataagctaattcaagtagcttatagcttaaagcttata 38684763  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 487
Target Start/End: Original strand, 29234695 - 29234737
Alignment:
Q  445 tttcgataagctaatttaagtagcttatagcttaaagcttata 487  Q
    |||||||||||||||| || |||||||||||||||| ||||||    
T  29234695 tttcgataagctaattcaattagcttatagcttaaatcttata 29234737  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 488
Target Start/End: Original strand, 27679114 - 27679152
Alignment:
Q  450 ataagctaatttaagtagcttatagcttaaagcttatag 488  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  27679114 ataagctaattcaagtagcttatggcttaaagcttatag 27679152  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 27316781 - 27316720
Alignment:
Q  174 tatgattagaaaaagtcttttagtaactgtcattttctcacgagtttataccttatttttat 235  Q
    ||||||||||||| ||| ||| ||||   ||||| ||||||||||||||| |||||||||||    
T  27316781 tatgattagaaaaggtcgtttggtaataatcattctctcacgagtttatatcttatttttat 27316720  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 478
Target Start/End: Complemental strand, 28444812 - 28444783
Alignment:
Q  449 gataagctaatttaagtagcttatagctta 478  Q
    ||||||||||||||||||||||||||||||    
T  28444812 gataagctaatttaagtagcttatagctta 28444783  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 440
Target Start/End: Original strand, 6841992 - 6842048
Alignment:
Q  384 cgagagtagtactattcttgtttttcgttgtgaaagtattcgtggtaaaagacattt 440  Q
    |||| ||||| ||||||||||||||||||| | || | |||||||||||| ||||||    
T  6841992 cgagggtagtgctattcttgtttttcgttgcggaactgttcgtggtaaaaaacattt 6842048  T

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