View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5067_high_9 (Length: 433)
Name: NF5067_high_9
Description: NF5067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5067_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 12 - 417
Target Start/End: Original strand, 3744366 - 3744764
Alignment:
| Q |
12 |
atcatcaattatgctagcccaaagctcgttccgtagaaggatttatcgcgtcaaaagtagcaagacatagtgaataaaatatccaacttaaaacaagaaa |
111 |
Q |
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| T |
3744366 |
atcatcaattatgctagctcaaagctcgttccgtagaaggatttatcgcgtcataagtagcaagacatagcgaataaaatatccaacttaaaacaagaaa |
3744465 |
T |
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| Q |
112 |
acatatgctaaatttaatcaaatacatcatatttccctctcttaatccacaattactaattcaaaatcaagaacaaagaacaagaacaatcacaatcaca |
211 |
Q |
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| T |
3744466 |
acatatgctaaatttaatcaaatacatcatatttctctctcttaatccacaattactaattcaaaatcaaga-------acaagaacaatcaaaatcaca |
3744558 |
T |
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| Q |
212 |
gaaacagaataactgcattgcaaatcaaaattactaatttttattacatcaaaccaaataccatcacacaagcacgaccttaaaaaacaacctggtactc |
311 |
Q |
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| T |
3744559 |
gaaacagaataactgcattgcaaatcaaaattactaatttttattacatcaaaccaaataccatcacacaagcacgaccttaaaaaacaacctagtactc |
3744658 |
T |
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| Q |
312 |
ttctgcccccaaagaccatcacacatacactacatcattattcaaaacaaaaattcaagcaatctgaacttgaatggttctgggcttcttaggctgagga |
411 |
Q |
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| T |
3744659 |
ttctgcccccaaagaccatcacacatacactacatcattattcaaaacaaaaattcaagcaacctgaacctgaatggttctaggtttcttaggctgagga |
3744758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 365 - 409
Target Start/End: Complemental strand, 4084497 - 4084453
Alignment:
| Q |
365 |
ttcaagcaatctgaacttgaatggttctgggcttcttaggctgag |
409 |
Q |
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| T |
4084497 |
ttcaagcaatctgaacctgaatagttctgggtttcttaggctgag |
4084453 |
T |
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