View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5067_low_11 (Length: 407)
Name: NF5067_low_11
Description: NF5067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5067_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 14 - 389
Target Start/End: Original strand, 34669216 - 34669591
Alignment:
| Q |
14 |
atataagccatattgcgaggttcagatgcaccggtagctgagcaatagacaatccgagcttcaggtagttgagcctgtcaaattttaaagaaagaacttg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34669216 |
atataagccatattgcgaggttcagatgcaccggtagctgagcaatagacaatccgagcttcaggtagttgagcctgtcaaattttaaagaaagaacttg |
34669315 |
T |
|
| Q |
114 |
gaataattcatacactcaaaactgattatttcattttgaagtgaacattaacacaagtagagtgtacaaacctgtatagcaagtactgcttgaccagttt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34669316 |
gaataattcatacactcaaaactgattatttcattttgaagtgaacattaacacaactagagtgtacaaacctgtatagcaagtactgcttgaccagttt |
34669415 |
T |
|
| Q |
214 |
tcgttggattcttatccttttctggaaccaaattttttgctttatgacactgtaatgaagccgacacacttcagcaataaagattaaacaaatatatccc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34669416 |
tcgttggattcttatccttttctggaaccaaattttttgctttatgacactgtaatgaaaccgacacacttcagcaataaagattaaacaaatatatccc |
34669515 |
T |
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| Q |
314 |
tcaaaattaaacagtggaactaccaattgacaatatgattgatatccgttttaaaaagtctaatacctcatcaaaa |
389 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34669516 |
tcaaaattaaacagtggaactaccaattgacaatatgattgatatccgttttaaaaagtctaatacctcatcaaaa |
34669591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 275
Target Start/End: Original strand, 34630222 - 34630481
Alignment:
| Q |
14 |
atataagccatattgcgaggttcagatgcaccggtagctgagcaatagacaatccgagcttcaggtagttgagcctgtcaaattttaaagaaagaacttg |
113 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
34630222 |
atataagccatattgcgaggttcagatgcaccagtagctgagcaataaacaacccgagcttcaggtagttgagcctgtcaaattttaatggaagaacttt |
34630321 |
T |
|
| Q |
114 |
gaataattcatacactcaaaactgattatttcattttgaagtgaacattaacacaagtagagtgtacaaacctgtatagcaagtactgcttgaccagttt |
213 |
Q |
| |
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|||||||| |||||||||||||| ||||||||||||||||||||||| |||||||| |||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
34630322 |
gaataatttatacactcaaaactaattatttcattttgaagtgaacaataacacaactaga--gtacaaacctgtatatcaagtactgcttgaccagttt |
34630419 |
T |
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| Q |
214 |
tcgttggattcttatccttttctggaaccaaattttttgctttatgacactgtaatgaagcc |
275 |
Q |
| |
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||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
34630420 |
tcgttggcttcttatccttttcgggaaccaaattttttgctttatgacactgtaatgaagcc |
34630481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 388
Target Start/End: Original strand, 34630549 - 34630630
Alignment:
| Q |
307 |
atatccctcaaaattaaacagtggaactaccaattgacaatatgattgatatccgttttaaaaagtctaatacctcatcaaa |
388 |
Q |
| |
|
||||||||||||||| |||||||||| || ||||||| |||| || |||| ||| ||| |||||| |||||||||||||||| |
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|
| T |
34630549 |
atatccctcaaaattcaacagtggaaatatcaattgagaataggaatgatttccatttaaaaaagcctaatacctcatcaaa |
34630630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 14 - 389
Target Start/End: Original strand, 26963014 - 26963389
Alignment:
| Q |
14 |
atataagccatattgcgaggttcagatgcaccggtagctgagcaatagacaatccgagcttcaggtagttgagcctgtcaaattttaaagaaagaacttg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26963014 |
atataagccatattgcgaggttcagatgcaccggtagctgagcaatagacaatccgagcttcaggtagttgagcctgtcaaattttaaagaaagaacttg |
26963113 |
T |
|
| Q |
114 |
gaataattcatacactcaaaactgattatttcattttgaagtgaacattaacacaagtagagtgtacaaacctgtatagcaagtactgcttgaccagttt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26963114 |
gaataattcatacactcaaaactgattatttcattttgaagtgaacattaacacaactagagtgtacaaacctgtatagcaagtactgcttgaccagttt |
26963213 |
T |
|
| Q |
214 |
tcgttggattcttatccttttctggaaccaaattttttgctttatgacactgtaatgaagccgacacacttcagcaataaagattaaacaaatatatccc |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26963214 |
tcgttggattcttatccttttctggaaccaaattttttgctttatgacactgtaatgaaaccgacacacttcagcaataaagattaaacaaatatatccc |
26963313 |
T |
|
| Q |
314 |
tcaaaattaaacagtggaactaccaattgacaatatgattgatatccgttttaaaaagtctaatacctcatcaaaa |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
26963314 |
tcaaaattaaacagtggaactaccaattgacaataggattgatatccgttttaaaaagtctgatacctcatcaaaa |
26963389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 275
Target Start/End: Original strand, 26854178 - 26854437
Alignment:
| Q |
14 |
atataagccatattgcgaggttcagatgcaccggtagctgagcaatagacaatccgagcttcaggtagttgagcctgtcaaattttaaagaaagaacttg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| ||||| | |||||||| |
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| T |
26854178 |
atataagccatattgcgaggttcagatgcaccagtagctgagcaataaacaacccgagcttcaggtagttgagcctgtcaaaatttaatggaagaacttt |
26854277 |
T |
|
| Q |
114 |
gaataattcatacactcaaaactgattatttcattttgaagtgaacattaacacaagtagagtgtacaaacctgtatagcaagtactgcttgaccagttt |
213 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||||| |||||||| |||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
26854278 |
gaataatttatacactcaaaactaattatttcattttgaagtgaacaataacacaactaga--gtacaaacctgtatatcaagtactgcttgaccagttt |
26854375 |
T |
|
| Q |
214 |
tcgttggattcttatccttttctggaaccaaattttttgctttatgacactgtaatgaagcc |
275 |
Q |
| |
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||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26854376 |
tcgttggcttcttatccttttcgggaaccaaattttttgctttatgacactgtaatgaagcc |
26854437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 388
Target Start/End: Original strand, 26854505 - 26854586
Alignment:
| Q |
307 |
atatccctcaaaattaaacagtggaactaccaattgacaatatgattgatatccgttttaaaaagtctaatacctcatcaaa |
388 |
Q |
| |
|
||||||||||||||| |||||||||| || ||||||| |||| || |||| ||| ||| |||||| |||||||||||||||| |
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|
| T |
26854505 |
atatccctcaaaattcaacagtggaaatatcaattgagaataggaatgatttccatttaaaaaagcctaatacctcatcaaa |
26854586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 18467606 - 18467689
Alignment:
| Q |
14 |
atataagccatattgcgaggttcagatgcaccggtagctgagcaatagacaatccgagcttcaggtagttgagcctgtcaaatt |
97 |
Q |
| |
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|||||| ||||||||||||||||||||||||| || ||||||||||| |||| |||||||||||||||| | ||||| ||||| |
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| T |
18467606 |
atataacccatattgcgaggttcagatgcaccagttgctgagcaataaacaacacgagcttcaggtagtttatcctgtaaaatt |
18467689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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