View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5067_low_15 (Length: 293)
Name: NF5067_low_15
Description: NF5067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5067_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 31 - 271
Target Start/End: Original strand, 42662622 - 42662862
Alignment:
| Q |
31 |
cagagagaggtaatatagccaaagttggatctgcagctttcaaaactaaagaatgtatacatcttgaagttatgtgaagctcttcagctaaaggtaaaac |
130 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42662622 |
cagagagaggtaagatagccaaagttggatctgcagctttcaaaactaaagaatgtatacatcttgaagttatgtgaagctcttcagctaaaggtaaaac |
42662721 |
T |
|
| Q |
131 |
ctcttcacatgttttgagtgccttgagtgtgtctgtccattgaccaaatatgtggttaaggaaattttcagtttgtatcattaggtttccttctccataa |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42662722 |
atcttcacatgttttgagtgccttgagtgtgtctgtccattgaccaaatatgtggttaaggaaattttcagtttgtatcattaggtttccttctccataa |
42662821 |
T |
|
| Q |
231 |
tcctcactcatttgtagaaactcagctgcacatcttagagg |
271 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42662822 |
tcttcactcatttgtagaaactcagctgcacatcttagagg |
42662862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University