View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5067_low_16 (Length: 285)
Name: NF5067_low_16
Description: NF5067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5067_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 72 - 267
Target Start/End: Complemental strand, 19937383 - 19937188
Alignment:
| Q |
72 |
gttgctcagggtaagaagcaaatgccaacacagaggactgaatgggttcctcttaaggataacccttcaggtataggctcatctgcagccttccaacaac |
171 |
Q |
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| T |
19937383 |
gttgctcagggtaagaagcaaatgccaacacagaggactgaatgggttcctcttaaggacaacccttcaggtataggctcatctgcagctttccaacaac |
19937284 |
T |
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| Q |
172 |
ctgtttctcggccagctgctacagaggaagctattccgactcagcactcaagtccggtctttacagagctaaccaacttgcaatctcagccacaac |
267 |
Q |
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| T |
19937283 |
ctatttctcggccagctgctacagaggaagctattccgactcagcactcaagtctgatccctacagagctaaccaacttgcaatctcagccacaac |
19937188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 19937459 - 19937419
Alignment:
| Q |
14 |
catagggcatcatgtttcagtttgtcggtggattcatccac |
54 |
Q |
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| T |
19937459 |
catagggcatcatatttcagtttgtcggtggattcatccac |
19937419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 73 - 266
Target Start/End: Original strand, 8478801 - 8478997
Alignment:
| Q |
73 |
ttgctcagggtaagaagcaaatgccaacacagaggact---gaatgggttcctcttaaggataacccttcaggtataggctcatctgcagccttccaaca |
169 |
Q |
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| T |
8478801 |
ttgctcaggggaagaagccaatgccaacacagaggactcatgaatgggttcctcttaaggacaacccttcaggtataggctcatctgcagccttccaaca |
8478900 |
T |
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| Q |
170 |
acctgtttctcggccagctgctacagaggaagctattccgactcagcactcaagtccggtctttacagagctaaccaacttgcaatctcagccacaa |
266 |
Q |
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| T |
8478901 |
acctgtttctcggccagctgctaccaaggaagctattccgactcagaactcaagtccagtccctacagagctaaccaacttgcaatctcagccacaa |
8478997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 8478724 - 8478764
Alignment:
| Q |
14 |
catagggcatcatgtttcagtttgtcggtggattcatccac |
54 |
Q |
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| T |
8478724 |
catagggcatcatatttcagtttgtcggtggattcatccac |
8478764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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