View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5067_low_17 (Length: 273)

Name: NF5067_low_17
Description: NF5067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5067_low_17
NF5067_low_17
[»] chr8 (14 HSPs)
chr8 (4-171)||(25603784-25603951)
chr8 (76-171)||(25799545-25799640)
chr8 (40-171)||(24913747-24913881)
chr8 (46-171)||(25489420-25489547)
chr8 (40-171)||(25646236-25646369)
chr8 (15-171)||(25321864-25322004)
chr8 (112-171)||(25694637-25694699)
chr8 (74-120)||(25569168-25569214)
chr8 (240-273)||(25694768-25694801)
chr8 (241-273)||(25604027-25604059)
chr8 (240-273)||(25322071-25322104)
chr8 (63-120)||(25340253-25340310)
chr8 (127-164)||(25714482-25714519)
chr8 (241-273)||(25646439-25646471)
[»] scaffold0070 (1 HSPs)
scaffold0070 (76-171)||(17790-17887)


Alignment Details
Target: chr8 (Bit Score: 156; Significance: 6e-83; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 4 - 171
Target Start/End: Original strand, 25603784 - 25603951
Alignment:
Q  4 atgtcgaagaatatttttatgcacaattatgtagcaacctactatgacaaaaaaggcagaaatattcaaccaaaaaactgattagaaagttcagtaatag 103  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  25603784 atgtccaaaaatatttttatgcacaattatgtagcaacctactatgacaaaaaaggcagaaatattcaaccaaaaaactgattagaaagttcagtaatat 25603883  T
Q  104 aagatcttttcttcccattcgtacacaatgagtcaagaccctcactactctcctccaaagactgcacc 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25603884 aagatcttttcttcccattcgtacacaatgagtcaagaccctcactactctcctccaaagactgcacc 25603951  T

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Target: chr8; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 76 - 171
Target Start/End: Original strand, 25799545 - 25799640
Alignment:
Q  76 aaaaactgattagaaagttcagtaatagaagatcttttcttcccattcgtacacaatgagtcaagaccctcactactctcctccaaagactgcacc 171  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  25799545 aaaaactgattacaaagttcagtaatagaagatcttttcttcccattcttacacaatgattcaagaccctcactactctcctccaaagactgcacc 25799640  T

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Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 40 - 171
Target Start/End: Complemental strand, 24913881 - 24913747
Alignment:
Q  40 acctactatgacaaaaaaggcagaaatattcaaccaaaaaactgattagaaagttcagtaatagaagatcttttcttcccattcgtacacaatgag---- 135  Q
    |||| |||| ||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||        
T  24913881 acctgctataacataaaagacagaaatattcaaccaaaaa-ctgattagaaagttcagtaatagaagatcttttcttcccattcttacacaatgagtcaa 24913783  T
Q  136 tcaagaccctcactactctcctccaaagactgcacc 171  Q
    ||||||| ||||||||| ||||||||||||||||||    
T  24913782 tcaagacgctcactactttcctccaaagactgcacc 24913747  T

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Target: chr8; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 46 - 171
Target Start/End: Original strand, 25489420 - 25489547
Alignment:
Q  46 tatgacaaaaaaggcagaaatattcaaccaaaaaactgattagaaagttcagtaatagaagatcttttcttcccattcgtacacaatgagtcaagaccct 145  Q
    ||||||| ||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  25489420 tatgacataaaagacagaaatattcaatcaaaa-actgattagaaagttcagtaatagaagatcttttcttcctattcttacacaatgagtcaagaccct 25489518  T
Q  146 cactac---tctcctccaaagactgcacc 171  Q
     |||||   ||||||||||||||||||||    
T  25489519 tactactattctcctccaaagactgcacc 25489547  T

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Target: chr8; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 40 - 171
Target Start/End: Original strand, 25646236 - 25646369
Alignment:
Q  40 acctactatgacaaaaaaggcagaaatattcaaccaaaaaactgattagaaagttcagtaatagaagatcttttcttcccattcgtacacaatgagtcaa 139  Q
    |||| |||| ||| ||||| |||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  25646236 acctgctataacataaaagacagaaatattcaactaaaa-actgattagaaggttcagtaatagaagatcttttcttcccattcttacacaatgagtcaa 25646334  T
Q  140 gaccctcactac---tctcctccaaagactgcacc 171  Q
    |||||| |||||   ||||||||||||||||||||    
T  25646335 gacccttactactattctcctccaaagactgcacc 25646369  T

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Target: chr8; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 171
Target Start/End: Original strand, 25321864 - 25322004
Alignment:
Q  15 tatttttatgcacaattatgtagcaacctactatgacaaaaaaggcagaaatattcaaccaaaaaactgattagaaagttcagtaatagaagatcttttc 114  Q
    ||||||| |||| |||||||||||||||| |||||||| |||||||||| ||||||||||||||| |||||||||               ||||||||||    
T  25321864 tatttttctgcaaaattatgtagcaacctgctatgacataaaaggcagatatattcaaccaaaaa-ctgattaga---------------agatcttttc 25321947  T
Q  115 ttcccattcgtacacaatgagtcaagaccctcactactctcctccaaagactgcacc 171  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  25321948 ttcccattcttacacaatgagtcaagaccctcactactctcctccaaagactgcacc 25322004  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 25694637 - 25694699
Alignment:
Q  112 ttcttcccattcgtacacaatgagtcaagaccctcactac---tctcctccaaagactgcacc 171  Q
    |||||||||||| ||||||||||||||||||||| |||||   ||||||||||||||||||||    
T  25694637 ttcttcccattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 25694699  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 25569168 - 25569214
Alignment:
Q  74 caaaaaactgattagaaagttcagtaatagaagatcttttcttccca 120  Q
    ||||||| ||||||| ||||||||||||||||||||||||| |||||    
T  25569168 caaaaaaatgattagcaagttcagtaatagaagatcttttcatccca 25569214  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 273
Target Start/End: Original strand, 25694768 - 25694801
Alignment:
Q  240 cagtacacacgatttacatgcttctgtgatgatc 273  Q
    ||||||||||||||||||||||||||||||||||    
T  25694768 cagtacacacgatttacatgcttctgtgatgatc 25694801  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 273
Target Start/End: Original strand, 25604027 - 25604059
Alignment:
Q  241 agtacacacgatttacatgcttctgtgatgatc 273  Q
    |||||||||||||||||||||||||||||||||    
T  25604027 agtacacacgatttacatgcttctgtgatgatc 25604059  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 240 - 273
Target Start/End: Original strand, 25322071 - 25322104
Alignment:
Q  240 cagtacacacgatttacatgcttctgtgatgatc 273  Q
    |||||||||| |||||||||||||||||||||||    
T  25322071 cagtacacacaatttacatgcttctgtgatgatc 25322104  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 25340253 - 25340310
Alignment:
Q  63 aaatattcaaccaaaaaactgattagaaagttcagtaatagaagatcttttcttccca 120  Q
    |||||| |||| |||||| ||||||| |||||||  |||||||||||||||| |||||    
T  25340253 aaatatgcaacaaaaaaaatgattagcaagttcataaatagaagatcttttcatccca 25340310  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 25714482 - 25714519
Alignment:
Q  127 cacaatgagtcaagaccctcactactctcctccaaaga 164  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  25714482 cacaaggagtcaagagcctcactactctcctccaaaga 25714519  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 273
Target Start/End: Original strand, 25646439 - 25646471
Alignment:
Q  241 agtacacacgatttacatgcttctgtgatgatc 273  Q
    |||||||||||||||||||||| ||||||||||    
T  25646439 agtacacacgatttacatgcttttgtgatgatc 25646471  T

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Target: scaffold0070 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 171
Target Start/End: Complemental strand, 17887 - 17790
Alignment:
Q  76 aaaaactgattagaaagttcagtaatagaagatcttttcttcccattcgtacacaatgag----tcaagaccctcactactctcctccaaagactgcacc 171  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||    ||||||||||||||||| |||||||| |||||||||    
T  17887 aaaaactgattagaaagttcagtaataga--atcttttcttcccattcttacacaatgagtcaatcaagaccctcactactttcctccaaggactgcacc 17790  T

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