View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5067_low_18 (Length: 262)
Name: NF5067_low_18
Description: NF5067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5067_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 9622099 - 9622340
Alignment:
| Q |
1 |
tacctatgtttatctcatagttattcaaannnnnnnatctcatatttataaaataaatataatttcttgtccaaacaatttcttgaagcctattttctca |
100 |
Q |
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| T |
9622099 |
tacctatttttatctcatagttattcaa--ttttttatctcatatttataaaataaatctagtttcttgtccaacaagtttcttgaagcctattttctca |
9622196 |
T |
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| Q |
101 |
taatcttttctagagttcaagtcctcaattaactggttttcattcaaaatttgttacatgttctcgttatggagtgatttttcaggctttagctgagttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
9622197 |
taatcttttctagagttcaagtcctcaattaactggttttcattcaaaatttgttacatcttctcgttatggagtgatttttcaggcttaagctgagttc |
9622296 |
T |
|
| Q |
201 |
tttggaaccctttactgtttattcgaaatatgcagagtttttac |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9622297 |
tttggaaccctttactgtttattcgaaatatgcagagtttttac |
9622340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 13615146 - 13614905
Alignment:
| Q |
1 |
tacctatgtttatctcatagttattcaaannnnnnnatctcatatttataaaataaatataatttcttgtccaaacaatttcttgaagcctattttctca |
100 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||| || |||||||||||| | |||||||||||||||||||||| |
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| T |
13615146 |
tacctatttttatctcatagttattcaa--ttttttatctcatatttataaaataaatctagtttcttgtccaacaagtttcttgaagcctattttctca |
13615049 |
T |
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| Q |
101 |
taatcttttctagagttcaagtcctcaattaactggttttcattcaaaatttgttacatgttctcgttatggagtgatttttcaggctttagctgagttc |
200 |
Q |
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| T |
13615048 |
taatcttttctagagttcaagtcctcaattaactggttttcattcaaaatttgttacatcttctcgttatggagtgatttttcaggcttaagctgagttc |
13614949 |
T |
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| Q |
201 |
tttggaaccctttactgtttattcgaaatatgcagagtttttac |
244 |
Q |
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| T |
13614948 |
tttggaaccctttactgtttattcgaaatatgcagagtttttac |
13614905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 213
Target Start/End: Original strand, 7583677 - 7583753
Alignment:
| Q |
138 |
tttcattcaaaatttgttacatgttctcgttatggagtgattttt-caggctttagctgagttctttggaacccttt |
213 |
Q |
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|||||||||| ||||||||||| ||||| |||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
7583677 |
tttcattcaatatttgttacatattctcattatggagtgatttttccaggttttagctgagttctttggaacccttt |
7583753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 7097724 - 7097665
Alignment:
| Q |
154 |
ttacatgttctcgttatggagtgatttttcaggctttagctgagttctttggaacccttt |
213 |
Q |
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|||||||||||| ||||| | ||||||||||||||||||||||| ||||||||||||||| |
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| T |
7097724 |
ttacatgttctcattatgtactgatttttcaggctttagctgagctctttggaacccttt |
7097665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 244
Target Start/End: Complemental strand, 7097630 - 7097597
Alignment:
| Q |
211 |
tttactgtttattcgaaatatgcagagtttttac |
244 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
7097630 |
tttactggttattcgaaatatgcagagtttttac |
7097597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 7583592 - 7583636
Alignment:
| Q |
40 |
tcatatttataaaataaatataatttcttgtccaaacaatttctt |
84 |
Q |
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||||||||||||| ||||| |||||||| ||| |||||||||||| |
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| T |
7583592 |
tcatatttataaactaaatgtaatttctagtcgaaacaatttctt |
7583636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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