View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5067_low_19 (Length: 254)
Name: NF5067_low_19
Description: NF5067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5067_low_19 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 29662771 - 29662998
Alignment:
| Q |
18 |
actggataaaattggagaagggaaagttaggcaacatacaggggatgttctgttccaagttgttttcaatgttgtgaccttcaagattttcaaggttgtc |
117 |
Q |
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| T |
29662771 |
actggataaaattggagaagggaaagttaggcaacatacaggggatgttctgttccaagttgttttcaatgttgtgaccttcaagattttcaaggttgtc |
29662870 |
T |
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| Q |
118 |
catatgaatatgatgttgaagcatggggttttcatgagaattggtccaattaagaatgcttatccctcaagtagcaagatgctgggttacatgtacattc |
217 |
Q |
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| T |
29662871 |
catatgaata---------agcatggggttttcatgagaattggtccaattaagaatgcttatccctcaagtagcaagatgctgggttacatgtacattc |
29662961 |
T |
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| Q |
218 |
tcggtgaaaaccaaatctccatgaatcaaaaaatgcc |
254 |
Q |
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| T |
29662962 |
tcggtgaaaaccaaatctccatgaatcaaaaaatgcc |
29662998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 33201707 - 33201613
Alignment:
| Q |
18 |
actggataaaattggagaagggaaagttaggcaacatacaggggatgttctgttccaagttgttttcaatgttgtgaccttcaagattttcaagg |
112 |
Q |
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| T |
33201707 |
actggataaaataggagaggggaaagtcaggcaacatactggagatgttctgttccctgttgttttcaatgccgtgaccttcaagattttcaagg |
33201613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 254
Target Start/End: Complemental strand, 33201579 - 33201459
Alignment:
| Q |
134 |
tgaagcatggggttttcatgagaattggtccaattaagaatgcttatccctcaagtagcaagatgctgggttacatgtacattctcggtgaaaaccaaat |
233 |
Q |
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| T |
33201579 |
tgaagcatggggttttcatgcgaattggtccaatagagaatgcctatctctcaagtagcaagatgcctgggtatgtgtatgttctcggtgaaaacccata |
33201480 |
T |
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| Q |
234 |
ctccatgaatcaaaaaatgcc |
254 |
Q |
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| T |
33201479 |
tttcatgaatcagaaaatgcc |
33201459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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