View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5067_low_2 (Length: 622)
Name: NF5067_low_2
Description: NF5067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5067_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 554; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 13 - 606
Target Start/End: Complemental strand, 23883654 - 23883061
Alignment:
| Q |
13 |
aatatcgacgccacaatttccacaactgatctactatgttgcaaaacatcagacattaaagcactccacaatttcccaatcccactccacttaatgtctg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
23883654 |
aatatcgacgccacaatttccacaactgatctactatgttgcaaaacatcagacattaaagcactccacaattttccaatcccacttcacttaatgtctg |
23883555 |
T |
|
| Q |
113 |
atgttttgcactatactcttacctgccacagtccctcatttactatctgaaagcgtagaaccattacttgcgagtgaaaatgaagctcgatcttatggaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
23883554 |
atgttttgcactatactcttacctgccacagtccctcatttactatctgaaagcgtaaaaccactacttgcgagtgaaaatgaagctcgatcttatggaa |
23883455 |
T |
|
| Q |
213 |
actagccaaattcaaaccttcaaaatctatccaaagttctgccacatacgcgctacttgcccgcaatctcttccaaaagacaccgatcaatttgccattc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23883454 |
actagccaaattcaaaccttcaaaatctatccaaagttctgccacatacgcgctgcttgcccgcaatctcttccaaaagacactgatcaatttgccattc |
23883355 |
T |
|
| Q |
313 |
tccccatgcaacactccctcctttatatgtgccatcggtgatcaaacgaatccaaccacttttagggaggctgccagttgatattttccaaaattgtcat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23883354 |
tccccatgcaacactccctcctttatatgtgccatcggtgatcaaacgaatccaaccacttttagggaggctgccagttgatattttccaaaattgtcat |
23883255 |
T |
|
| Q |
413 |
tgtaatgttttgcatatatagtagcagttttagcactagctgcatggcaattaacaagcttgctaatttccagccaaggattactaggtgacacaaaatc |
512 |
Q |
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| T |
23883254 |
tgtaatgttttgcatatatagtagcagttttagcactagctgcatgacaattaacaagcctgctaatttccagccaaggattactaggtgacacaaaatc |
23883155 |
T |
|
| Q |
513 |
ctcatcatgcatccttctgttcctccaattccacgaagtatgacatgcctaagcccaaaaaacagtccaatttcgggtcttcccctcactcaac |
606 |
Q |
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| T |
23883154 |
ctcatcatgcatccttctgttcctccaattccacgaagtatgacatgccttagcccaaaaaccagtccaatttcgggtcttcccctcactcaac |
23883061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 85 - 559
Target Start/End: Original strand, 23419728 - 23420190
Alignment:
| Q |
85 |
ttcccaatcccactccacttaatgtctgatgttttgcactatactcttacctgccaca--gtccctcatttactatctgaaagcgtagaaccattacttg |
182 |
Q |
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|||||||||| ||||| ||||||||| |||||||||||||||||| |||||||||| ||||||||||||||| | ||||||||||||||| || | |
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| T |
23419728 |
ttcccaatcctgctccatttaatgtctaatgttttgcactatactccgacctgccacaccgtccctcatttactagccgaaagcgtagaaccacta---g |
23419824 |
T |
|
| Q |
183 |
cgagtgaaaatgaagctcgatcttatggaaactagccaaattcaaaccttcaaaatctatccaaagttctgccacatacgcgctacttgcccgcaatctc |
282 |
Q |
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| | | |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||| |||||||||||| || ||||||| |
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| T |
23419825 |
caactcaaaatgaagctcgatcttatggaaaccagccaaattcaaaccttcaaaaactatccaaagttccgccacttacgcgctacttaaccacaatctc |
23419924 |
T |
|
| Q |
283 |
ttccaaaagacaccgatcaatttgccattctccccatgcaacactccctcctttatatgtgccatcggtgatcaaacgaatccaaccacttttagggagg |
382 |
Q |
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| | ||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||| ||| |
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| T |
23419925 |
tccaaaaagacacagatccatttgctattctccccatgcaacactccctcctttatatgtgcca-ccgtgatcaaacggatccagcca------------ |
23420011 |
T |
|
| Q |
383 |
ctgccagttgatattttccaaaattgtc-------attgtaatgttttgcatatatagtagcagttttagcactagctgcatggcaattaacaagcttgc |
475 |
Q |
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||||||| ||||||||||||||||||| |||||| |||||||| || | |||||||||||||| ||| | | |||||||||||| || |
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| T |
23420012 |
-tgccagtcgatattttccaaaattgtcatttgtaattgtagtgttttgc----atggaagcagttttagcaccagccacgagacaattaacaagcctgt |
23420106 |
T |
|
| Q |
476 |
taatttccagccaaggattactaggtgacacaaaatcctcatcatgcatccttctgttcctccaattccacgaagtatgacatg |
559 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||| |
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| T |
23420107 |
taatttccagtcaaggattactaggtgacacaaaatcctcatcatgcatcgttctgttcctccaattccacaacgtatgacatg |
23420190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 485 - 559
Target Start/End: Original strand, 23422273 - 23422347
Alignment:
| Q |
485 |
gccaaggattactaggtgacacaaaatcctcatcatgcatccttctgttcctccaattccacgaagtatgacatg |
559 |
Q |
| |
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|||||||||||||||| ||||||| |||||||||||||||| || ||||||| ||||||||| |||||||||||| |
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| T |
23422273 |
gccaaggattactaggcgacacaatatcctcatcatgcatcattttgttccttcaattccacaaagtatgacatg |
23422347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 216 - 329
Target Start/End: Complemental strand, 23877055 - 23876941
Alignment:
| Q |
216 |
agccaaattcaaaccttcaaaatctatccaaagttctgccacatacgcgctacttgcccgcaatctcttccaaaagacaccgatc-aatttgccattctc |
314 |
Q |
| |
|
||||||||| |||||||||||| || | ||||||| |||||||||| ||||| ||| |||||||||| ||||||||| |||| ||| || |||||| |
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| T |
23877055 |
agccaaattaaaaccttcaaaaactcccaaaagttccgccacatacgtgctacacacccccaatctcttcgaaaagacacagatcaaatgtgtcattcta |
23876956 |
T |
|
| Q |
315 |
cccatgcaacactcc |
329 |
Q |
| |
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||||||||||||||| |
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| T |
23876955 |
cccatgcaacactcc |
23876941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 318
Target Start/End: Original strand, 23421999 - 23422101
Alignment:
| Q |
216 |
agccaaattcaaaccttcaaaatctatccaaagttctgccacatacgcgctacttgcccgcaatctcttccaaaagacaccgatcaatttgccattctcc |
315 |
Q |
| |
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|||||||||||||||||||||| | | ||||||| ||||||||||| |||| ||| |||||| ||| |||||| || |||| |||||||||||| | |
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| T |
23421999 |
agccaaattcaaaccttcaaaaattcccaaaagttccgccacatacgcactacacacccccaatcttttcgaaaagatacagatccatttgccattcttc |
23422098 |
T |
|
| Q |
316 |
cca |
318 |
Q |
| |
|
||| |
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| T |
23422099 |
cca |
23422101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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