View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5067_low_20 (Length: 254)

Name: NF5067_low_20
Description: NF5067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5067_low_20
NF5067_low_20
[»] chr4 (16 HSPs)
chr4 (1-190)||(7773505-7773694)
chr4 (1-190)||(7765834-7766023)
chr4 (43-183)||(7877945-7878085)
chr4 (1-167)||(7786679-7786845)
chr4 (80-191)||(7908528-7908639)
chr4 (1-81)||(7790381-7790461)
chr4 (1-83)||(45365900-45365982)
chr4 (1-185)||(7237423-7237601)
chr4 (1-81)||(7771696-7771776)
chr4 (1-172)||(48898953-48899121)
chr4 (110-173)||(7771610-7771673)
chr4 (110-173)||(7790295-7790358)
chr4 (1-32)||(7878733-7878764)
chr4 (3-80)||(48156111-48156188)
chr4 (122-167)||(50669300-50669345)
chr4 (126-166)||(37826798-37826838)
[»] chr5 (2 HSPs)
chr5 (1-74)||(9120071-9120144)
chr5 (1-74)||(179366-179439)
[»] chr8 (6 HSPs)
chr8 (104-158)||(4962303-4962357)
chr8 (110-166)||(12195543-12195599)
chr8 (110-166)||(12439971-12440027)
chr8 (110-166)||(12200561-12200617)
chr8 (110-166)||(12444989-12445045)
chr8 (1-166)||(15349102-15349264)
[»] chr6 (1 HSPs)
chr6 (116-166)||(21979423-21979473)


Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 7773505 - 7773694
Alignment:
Q  1 ctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaataccgacaaaccagaatgtactaatgctct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||    
T  7773505 ctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaatacccacaaaccagaatgtaccaatgcact 7773604  T
Q  101 atggtcaacatcatttggaagaggcatctcaaacaatttcctttccattaaatcaaaggcaacaatgccattccaacctaaatcatgacg 190  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||| ||||||| ||||    
T  7773605 atggtgaacattatttggaagaggcatctcaaacaatttcctttccattaaatcaaaggaaacaattacattccaacgtaaatcacgacg 7773694  T

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Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 7766023 - 7765834
Alignment:
Q  1 ctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaataccgacaaaccagaatgtactaatgctct 100  Q
    ||||||||||||||||||||| ||||||||||| | |||||||| |||||| ||| ||| |||||||| ||||| |||||||||||||||| |||||| |    
T  7766023 ctttcatcacccatatttcaattgtatcattagtagtatccttaacccatatactgagaaattctccagatacccacaaaccagaatgtaccaatgctgt 7765924  T
Q  101 atggtcaacatcatttggaagaggcatctcaaacaatttcctttccattaaatcaaaggcaacaatgccattccaacctaaatcatgacg 190  Q
     |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| ||| | || ||| |||||||||    
T  7765923 gtggtcaacatcatttggaagaggcatctcaaacaatatcctttccgttaaatcaaagccaacaatgacatccaaagctatatcatgacg 7765834  T

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Target: chr4; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 43 - 183
Target Start/End: Complemental strand, 7878085 - 7877945
Alignment:
Q  43 tagcccatacactaagatattctccaaataccgacaaaccagaatgtactaatgctctatggtcaacatcatttggaagaggcatctcaaacaatttcct 142  Q
    ||||||||| ||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  7878085 tagcccatagactgagaaattctccaaatacccacaaaccagaatgtactaatgctctatggtcaacattatttggaagaggcatctcaaacaatttctt 7877986  T
Q  143 ttccattaaatcaaaggcaacaatgccattccaacctaaat 183  Q
    ||||||||||||||||| || |||| || ||||||||||||    
T  7877985 ttccattaaatcaaaggtaagaatgacaatccaacctaaat 7877945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 7786845 - 7786679
Alignment:
Q  1 ctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaataccgacaaaccagaatgtactaatgctct 100  Q
    ||||||||||||||||||||| ||||||||||| | |||||||| |||||| ||| ||| |||| ||| ||||| |||||||||||||||| ||  || |    
T  7786845 ctttcatcacccatatttcaattgtatcattagtagtatccttaacccatatactgagaaattccccagatacccacaaaccagaatgtaccaactctgt 7786746  T
Q  101 atggtcaacatcatttggaagaggcatctcaaacaatttcctttccattaaatcaaaggcaacaatg 167  Q
     |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||    
T  7786745 gtggtcaacatcatttggaagaggcatctcaaacaatatcctttccgttaaatcaaagccaacaatg 7786679  T

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Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 80 - 191
Target Start/End: Complemental strand, 7908639 - 7908528
Alignment:
Q  80 accagaatgtactaatgctctatggtcaacatcatttggaagaggcatctcaaacaatttcctttccattaaatcaaaggcaacaatgccattccaacct 179  Q
    |||||||||| || ||||||| ||| ||| |||| |||||| ||| ||||||||||| |||||||||||||||||||||||||||||| || || |||||    
T  7908639 accagaatgtcctgatgctctgtggacaaaatcacttggaataggtatctcaaacaacttcctttccattaaatcaaaggcaacaatgacagtcaaacct 7908540  T
Q  180 aaatcatgacgt 191  Q
    |||||| |||||    
T  7908539 aaatcacgacgt 7908528  T

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Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 7790461 - 7790381
Alignment:
Q  1 ctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaataccgacaaac 81  Q
    ||||||||||||||||||||| |||||||||| ||| ||||||||| |||| ||| ||| |||||||||||||| ||||||    
T  7790461 ctttcatcacccatatttcaattgtatcattatcataatccttagcgcataaactgagaaattctccaaatacccacaaac 7790381  T

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Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 45365900 - 45365982
Alignment:
Q  1 ctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaataccgacaaacca 83  Q
    |||||||||||||||||||||||||||||||| ||| |||| ||||||| | ||| | | |||||||||||||| ||||||||    
T  45365900 ctttcatcacccatatttcaactgtatcattatcataatccatagcccaaaaactgaaaaattctccaaatacccacaaacca 45365982  T

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Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 7237423 - 7237601
Alignment:
Q  1 ctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaataccgacaaaccagaatgtactaatgctct 100  Q
    ||||||||||||||||| ||| |||||||||| ||| ||||| |||||||| ||| ||| |||||||||||||| ||| |  | || | |       |||    
T  7237423 ctttcatcacccatattacaattgtatcattatcataatcctgagcccatagactgagaaattctccaaatacccacatattataaagaa------atct 7237516  T
Q  101 atggtcaacatcatttggaagaggcatctcaaacaatttcctttccattaaatcaaaggcaacaatgccattccaacctaaatca 185  Q
    |||||||| |||| |||||| |||||||||||||  |||| |||||||||||||||  ||||| ||| ||| | || ||||||||    
T  7237517 atggtcaaaatcacttggaacaggcatctcaaacgttttcttttccattaaatcaagcgcaactatgacatccaaatctaaatca 7237601  T

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Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 7771776 - 7771696
Alignment:
Q  1 ctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaataccgacaaac 81  Q
    ||||||||||||||||| ||| |||||||||| ||| ||||||||| |||| ||| ||| |||||||||||||| ||||||    
T  7771776 ctttcatcacccatattacaattgtatcattatcataatccttagcgcataaactgagaaattctccaaatacccacaaac 7771696  T

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Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 48899121 - 48898953
Alignment:
Q  1 ctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaataccgacaaaccagaatgtactaatgctct 100  Q
    |||||||||||||||||||||||||||||||||||| ||    |||||||| ||| | | | |||||||| ||| |||||||| ||  | || | |   |    
T  48899121 ctttcatcacccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagacccacaaaccacaa--tcctga-ggaat 48899025  T
Q  101 atggtcaacatcatttggaagaggcatctcaaacaatttcctttccattaaatcaaaggcaacaatgccatt 172  Q
    ||| || | ||||| |||| ||| |||||| |||| |||||||||| |||||||||||||||||||| ||||    
T  48899024 atgttccaaatcatctggaggagacatctctaacagtttcctttccgttaaatcaaaggcaacaatgacatt 48898953  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 7771673 - 7771610
Alignment:
Q  110 atcatttggaagaggcatctcaaacaatttcctttccattaaatcaaaggcaacaatgccattc 173  Q
    |||| |||||| |||||||||||||| |||| | |||||||||||||| | ||||||| |||||    
T  7771673 atcacttggaacaggcatctcaaacattttcttctccattaaatcaaacgtaacaatgacattc 7771610  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 7790358 - 7790295
Alignment:
Q  110 atcatttggaagaggcatctcaaacaatttcctttccattaaatcaaaggcaacaatgccattc 173  Q
    |||| |||||| |||||||||||||| |||| | |||||||||||||| | ||||||| |||||    
T  7790358 atcacttggaacaggcatctcaaacattttcttctccattaaatcaaacgtaacaatgacattc 7790295  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 7878764 - 7878733
Alignment:
Q  1 ctttcatcacccatatttcaactgtatcatta 32  Q
    ||||||||||||||||||||||||||||||||    
T  7878764 ctttcatcacccatatttcaactgtatcatta 7878733  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 48156111 - 48156188
Alignment:
Q  3 ttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaataccgacaaa 80  Q
    ||||||||||||||||||||| | ||||||||   |||   |||||||| ||| ||| |||||||||||||| |||||    
T  48156111 ttcatcacccatatttcaactctttcattagcccaatcaacagcccataaactgagaaattctccaaatacccacaaa 48156188  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 50669345 - 50669300
Alignment:
Q  122 aggcatctcaaacaatttcctttccattaaatcaaaggcaacaatg 167  Q
    |||||| || |||| |||||||||||| ||||||||||||||||||    
T  50669345 aggcatgtctaacagtttcctttccatcaaatcaaaggcaacaatg 50669300  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 37826798 - 37826838
Alignment:
Q  126 atctcaaacaatttcctttccattaaatcaaaggcaacaat 166  Q
    ||||| |||| ||||||||||||||||| ||||||||||||    
T  37826798 atctctaacagtttcctttccattaaattaaaggcaacaat 37826838  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 9120144 - 9120071
Alignment:
Q  1 ctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaatacc 74  Q
    |||||||||||||||||||||||||||||||||||  |||| ||||||||| ||| ||| ||||||||||||||    
T  9120144 ctttcatcacccatatttcaactgtatcattagcaaaatccatagcccatatactgagaaattctccaaatacc 9120071  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 179439 - 179366
Alignment:
Q  1 ctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaatacc 74  Q
    |||||||||||||||||||||||||||||||| ||| |||| ||||||||| ||| ||| ||| ||||||||||    
T  179439 ctttcatcacccatatttcaactgtatcattatcataatccatagcccatatactgagaaattgtccaaatacc 179366  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 4962303 - 4962357
Alignment:
Q  104 gtcaacatcatttggaagaggcatctcaaacaatttcctttccattaaatcaaag 158  Q
    ||||| |||||| |||||||||||||| |||||||||||||||||||||||||||    
T  4962303 gtcaaaatcattgggaagaggcatctctaacaatttcctttccattaaatcaaag 4962357  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 12195599 - 12195543
Alignment:
Q  110 atcatttggaagaggcatctcaaacaatttcctttccattaaatcaaaggcaacaat 166  Q
    ||||| ||||||||| ||||| ||||||||||||||||||||||||||| |||||||    
T  12195599 atcatctggaagaggtatctctaacaatttcctttccattaaatcaaagacaacaat 12195543  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 12440027 - 12439971
Alignment:
Q  110 atcatttggaagaggcatctcaaacaatttcctttccattaaatcaaaggcaacaat 166  Q
    ||||| ||||||||| ||||| ||||||||||||||||||||||||||| |||||||    
T  12440027 atcatctggaagaggtatctctaacaatttcctttccattaaatcaaagacaacaat 12439971  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 12200617 - 12200561
Alignment:
Q  110 atcatttggaagaggcatctcaaacaatttcctttccattaaatcaaaggcaacaat 166  Q
    ||||| ||||||| | ||||| | |||||||||||||||||||||||||||||||||    
T  12200617 atcatctggaagaagtatctctaccaatttcctttccattaaatcaaaggcaacaat 12200561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 12445045 - 12444989
Alignment:
Q  110 atcatttggaagaggcatctcaaacaatttcctttccattaaatcaaaggcaacaat 166  Q
    ||||| ||||||| | ||||| | |||||||||||||||||||||||||||||||||    
T  12445045 atcatctggaagaagtatctctaccaatttcctttccattaaatcaaaggcaacaat 12444989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 15349264 - 15349102
Alignment:
Q  1 ctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaataccgacaaaccagaatgtactaatgctct 100  Q
    |||||||||||||||||||||   ||||||||| || |||| ||| ||| | ||||| | |||| ||||| ||| |||||||| |||  || |  ||       
T  15349264 ctttcatcacccatatttcaaagctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagacccacaaaccacaatc-acca--gcatc 15349168  T
Q  101 atggtcaacatcatttggaagaggcatctcaaacaatttcctttccattaaatcaaaggcaacaat 166  Q
    ||| |||| ||||| |||| ||||||||||||||| |||||||||  |||||||||| ||||||||    
T  15349167 atgttcaaaatcatctggaggaggcatctcaaacagtttcctttcgtttaaatcaaatgcaacaat 15349102  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 21979423 - 21979473
Alignment:
Q  116 tggaagaggcatctcaaacaatttcctttccattaaatcaaaggcaacaat 166  Q
    ||||||||| |||||||| | ||||||||| ||||||||||||||||||||    
T  21979423 tggaagagggatctcaaaaagtttcctttctattaaatcaaaggcaacaat 21979473  T

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