View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5067_low_25 (Length: 244)
Name: NF5067_low_25
Description: NF5067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5067_low_25 |
 | |
|
| [»] scaffold0070 (1 HSPs) |
| | |
|
| [»] scaffold0830 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 18)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 25604353 - 25604567
Alignment:
| Q |
13 |
cagagctaaactaaaaatagatgacatgtgagtcaatatatcatcaatttggtccccagttatttggactaaatttgaatccatgacctccataatggaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25604353 |
cagagctaaactaaaaatagatgacatgtgagtcaatatatcatcaatttcgtccccagttatttggactaaatttgaatccatgacctccataatggaa |
25604452 |
T |
|
| Q |
113 |
ttaggcaatgatcgactgatccatgtcttcacgcttagttctgcaacaaacatatcatctattggctttctctttgtaaagatttccattaccataatcc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
25604453 |
ttaggcaatgatcgactgatccatgtcttcaagcttagttctgcaacaaacatatcatctattggctttctctttgtaaagatttccattagcataattc |
25604552 |
T |
|
| Q |
213 |
catagctgtacacat |
227 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
25604553 |
catagctgtacacat |
25604567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 25489920 - 25490130
Alignment:
| Q |
17 |
gctaaactaaaaatagatgacatgtgagtcaatatatcatcaatttggtccccagttatttggactaaatttgaatccatgacctccataatggaattag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25489920 |
gctaaactaaaaatagatgacatgtgagtcaatatattatcaatttggtccccagttatttggactaaatttgaatccatgacctccataatggaattag |
25490019 |
T |
|
| Q |
117 |
gcaatgatcgactgatccatgtcttcacgcttagttctgcaacaaacatatcatctattggctttctctttgtaaagatttccattaccataatcccata |
216 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
25490020 |
gcaatgatcgactgatccatgtcttcaagcttagttctgcaacaaacatatcatctattggttttctccttgtaaagatttccattagcataatcccata |
25490119 |
T |
|
| Q |
217 |
gctgtacacat |
227 |
Q |
| |
|
||||||||||| |
|
|
| T |
25490120 |
gctgtacacat |
25490130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 25646762 - 25646972
Alignment:
| Q |
17 |
gctaaactaaaaatagatgacatgtgagtcaatatatcatcaatttggtccccagttatttggactaaatttgaatccatgacctccataatggaattag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25646762 |
gctaaactaaaaatagatgacatgtgagtcaatatatcatcaatttggtccccagttctttggactaaatttgaatccatgacctccataattgaattag |
25646861 |
T |
|
| Q |
117 |
gcaatgatcgactgatccatgtcttcacgcttagttctgcaacaaacatatcatctattggctttctctttgtaaagatttccattaccataatcccata |
216 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
25646862 |
gcaatgatctactgatccatgtcttcaagcttagttctgcaacaaacatatcatctattggctttctccttgtaaagatttccattagcataatcccata |
25646961 |
T |
|
| Q |
217 |
gctgtacacat |
227 |
Q |
| |
|
| ||||||||| |
|
|
| T |
25646962 |
gttgtacacat |
25646972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 25695077 - 25695288
Alignment:
| Q |
14 |
agagctaaactaaaaatagatgacatgtgagtcaatatatcatcaatttggtccccagttatttggactaaatttgaatccatgacctccataatggaat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25695077 |
agagctaaactaaaaatagatgacatgtgagtcaatatattatcaatttggtccccagttatttggactaaatttgaatccatgacctccataatggaat |
25695176 |
T |
|
| Q |
114 |
taggcaatgatcgactgatccatgtcttcacgcttagttctgcaacaaacatatcatctattggctttctctttgtaaagatttccattaccataatccc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||| ||||||||| |
|
|
| T |
25695177 |
taggcaatgatcgactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggctttcttcttgtgaagatttccattagcataatccc |
25695276 |
T |
|
| Q |
214 |
atagctgtacac |
225 |
Q |
| |
|
||||||| |||| |
|
|
| T |
25695277 |
atagctgaacac |
25695288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 24875761 - 24875551
Alignment:
| Q |
17 |
gctaaactaaaaatagatgacatgtgagtcaatatatcatcaatttggtccccagttatttggactaaatttgaatccatgacctccataatggaattag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24875761 |
gctaaactaaaaatagatgacatgtgagtcgatatatcatcaatttggtccccagttatttggactaaatttgaatccatgacctccataattgaattag |
24875662 |
T |
|
| Q |
117 |
gcaatgatcgactgatccatgtcttcacgcttagttctgcaacaaacatatcatctattggctttctctttgtaaagatttccattaccataatcccata |
216 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||| || | |||| ||||||||||||| |||||||||||| |
|
|
| T |
24875661 |
gcaatgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggcctttttcttgtgaagatttccattagcataatcccata |
24875562 |
T |
|
| Q |
217 |
gctgtacacat |
227 |
Q |
| |
|
||||||||||| |
|
|
| T |
24875561 |
gctgtacacat |
24875551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 25800006 - 25800216
Alignment:
| Q |
17 |
gctaaactaaaaatagatgacatgtgagtcaatatatcatcaatttggtccccagttatttggactaaatttgaatccatgacctccataatggaattag |
116 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
25800006 |
gctaaactaaaaatatatgacatgtgagtcaatatatcatcaatttggtccccagttatttggactaaatttgaatccatgacctccatgattgaattag |
25800105 |
T |
|
| Q |
117 |
gcaatgatcgactgatccatgtcttcacgcttagttctgcaacaaacatatcatctattggctttctctttgtaaagatttccattaccataatcccata |
216 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||| ||| |||||||| |
|
|
| T |
25800106 |
gcaatgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggctttcttcttgtgaagatttccattaacatgatcccata |
25800205 |
T |
|
| Q |
217 |
gctgtacacat |
227 |
Q |
| |
|
||||||||||| |
|
|
| T |
25800206 |
gctgtacacat |
25800216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 25322376 - 25322584
Alignment:
| Q |
17 |
gctaaactaaaaatagatgacatgtgagtcaatatatcatcaatttggtccccagttatttggactaaatttgaatccatgacctccataatggaattag |
116 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25322376 |
gctaaactaaaaatagatgatatgtgagtcgatagatcatcaatttggtccccagttatttggactaaatttgaatccatgacctccataatggaattag |
25322475 |
T |
|
| Q |
117 |
gcaatgatcgactgatccatgtcttcacgcttagttctgcaacaaacatatcatctattggctttctctttgtaaagatttccattaccataatcccata |
216 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||| ||| |||||||| |
|
|
| T |
25322476 |
gcaatgattgactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggctttcttcttgtgaagatttccattatcattatcccata |
25322575 |
T |
|
| Q |
217 |
gctgtacac |
225 |
Q |
| |
|
||||||||| |
|
|
| T |
25322576 |
gctgtacac |
25322584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 25714913 - 25715121
Alignment:
| Q |
17 |
gctaaactaaaaatagatgacatgtgagtcaatatatcatcaatttggtccccagttatttggactaaatttgaatccatgacctccataatggaattag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25714913 |
gctaaactaaaaatagatgacatgtgagtcgatatatcatcaatttggtccccagttatttggactaaatttgaatccatgacctccataattgaattag |
25715012 |
T |
|
| Q |
117 |
gcaatgatcgactgatccatgtcttcacgcttagttctgcaacaaacatatcatctattggctttctctttgtaaagatttccattaccataatcccata |
216 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||| | |||| ||||||||||||| |||||||||||| |
|
|
| T |
25715013 |
gcaatgattcactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggcttttttcttgttaagatttccattagcataatcccata |
25715112 |
T |
|
| Q |
217 |
gctgtacac |
225 |
Q |
| |
|
||||||||| |
|
|
| T |
25715113 |
gctgtacac |
25715121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 24913412 - 24913202
Alignment:
| Q |
17 |
gctaaactaaaaatagatgacatgtgagtcaatatatcatcaatttggtccccagttatttggactaaatttgaatccatgacctccataatggaattag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24913412 |
gctaaactaaaaatagatgacatgtgagtcaatatataatcaatttggtcccaagttatttggactaaatttgaatccatgacctccataattgaattag |
24913313 |
T |
|
| Q |
117 |
gcaatgatcgactgatccatgtcttcacgcttagttctgcaacaaacatatcatctattggctttctctttgtaaagatttccattaccataatcccata |
216 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||| || | |||| ||||||||||||| |||||||||||| |
|
|
| T |
24913312 |
gcaatgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggcattattcttgtgaagatttccattagcataatcccata |
24913213 |
T |
|
| Q |
217 |
gctgtacacat |
227 |
Q |
| |
|
||||||||||| |
|
|
| T |
24913212 |
gctgtacacat |
24913202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 25685367 - 25685577
Alignment:
| Q |
17 |
gctaaactaaaaatagatgacatgtgagtcaatatatcatcaatttggtccccagttatttggactaaatttgaatccatgacctccataatggaattag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
25685367 |
gctaaactaaaaatagatgacatgtgagtcaatatatcatcaattgtgtccccagttagttggactaaatttgaatccaggacctccataattgaattag |
25685466 |
T |
|
| Q |
117 |
gcaatgatcgactgatccatgtcttcacgcttagttctgcaacaaacatatcatctattggctttctctttgtaaagatttccattaccataatcccata |
216 |
Q |
| |
|
||||||||| | ||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| || |||||||||| |||||||||||| |
|
|
| T |
25685467 |
gcaatgatccaatgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggctttcttcttgtgaaaatttccattagcataatcccata |
25685566 |
T |
|
| Q |
217 |
gctgtacacat |
227 |
Q |
| |
|
||||||||||| |
|
|
| T |
25685567 |
gctgtacacat |
25685577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 25385777 - 25385937
Alignment:
| Q |
17 |
gctaaactaaaaatagatgacatgtgagtcaatatatcatcaatttggtccccagttatttggactaaatttgaatccatgacctccataatggaattag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25385777 |
gctaaactaaaaatagatgacatgtgagtcaatatataatcaatttggtccccagttatttggactaaatttgaatccatgacctccataatggaattag |
25385876 |
T |
|
| Q |
117 |
gcaatgatcgactgatccatgtcttcacgcttagttctgcaacaaacatatcatctattgg |
177 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
25385877 |
gcaatgatcgactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttgg |
25385937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 25452711 - 25452921
Alignment:
| Q |
17 |
gctaaactaaaaatagatgacatgtgagtcaatatatcatcaatttggtccccagttatttggactaaatttgaatccatgacctccataatggaattag |
116 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||| ||||||||||| |||||| || |||||||||||||||||||| || ||||||||| ||||||| |
|
|
| T |
25452711 |
gctaaaccaaaaatagatgacatgtaagtcaatatgtcatcaatttgttccccaatttgttggactaaatttgaatccaagatctccataattgaattag |
25452810 |
T |
|
| Q |
117 |
gcaatgatcgactgatccatgtcttcacgcttagttctgcaacaaacatatcatctattggctttctctttgtaaagatttccattaccataatcccata |
216 |
Q |
| |
|
| ||||||| ||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||| ||| |||||||| |
|
|
| T |
25452811 |
gaaatgatccactgatccatgtcttcaggcttagttctggaacaaacatatcatctgttggctttcttcttgtaaagatttccattaacatgatcccata |
25452910 |
T |
|
| Q |
217 |
gctgtacacat |
227 |
Q |
| |
|
||||||||||| |
|
|
| T |
25452911 |
gctgtacacat |
25452921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 25340719 - 25340929
Alignment:
| Q |
17 |
gctaaactaaaaatagatgacatgtgagtcaatatatcatcaatttggtccccagttatttggactaaatttgaatccatgacctccataatggaattag |
116 |
Q |
| |
|
||||||| ||||||||||||||||| | ||||||| ||||||||||| || ||| || |||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
25340719 |
gctaaaccaaaaatagatgacatgtaattcaatatgtcatcaatttgttctccaatttgttggactaaatttgaatccaagacctccataattgaattag |
25340818 |
T |
|
| Q |
117 |
gcaatgatcgactgatccatgtcttcacgcttagttctgcaacaaacatatcatctattggctttctctttgtaaagatttccattaccataatcccata |
216 |
Q |
| |
|
| ||||||| ||||||||||||||||| | ||||||| |||||||||||||||||| |||||||||| |||| ||||||||||||| ||| |||||||| |
|
|
| T |
25340819 |
gaaatgatccactgatccatgtcttcaagtttagttcagcaacaaacatatcatctgttggctttcttcttgtgaagatttccattaacatgatcccata |
25340918 |
T |
|
| Q |
217 |
gctgtacacat |
227 |
Q |
| |
|
||||||||||| |
|
|
| T |
25340919 |
gctgtacacat |
25340929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 25474995 - 25475205
Alignment:
| Q |
17 |
gctaaactaaaaatagatgacatgtgagtcaatatatcatcaatttggtccccagttatttggactaaatttgaatccatgacctccataatggaattag |
116 |
Q |
| |
|
||||||| ||||||||||| |||| ||||||||| ||||||||||| |||||| || ||||||||||||||||||||||||| || ||||| ||||||| |
|
|
| T |
25474995 |
gctaaaccaaaaatagatgttatgttagtcaatatgtcatcaatttgttccccatttttttggactaaatttgaatccatgacttctataattgaattag |
25475094 |
T |
|
| Q |
117 |
gcaatgatcgactgatccatgtcttcacgcttagttctgcaacaaacatatcatctattggctttctctttgtaaagatttccattaccataatcccata |
216 |
Q |
| |
|
||||||||| | ||||||||||||||| |||||||||||||||||||||||||| |||||||| | |||| ||||||||||||| |||||||||||| |
|
|
| T |
25475095 |
gcaatgatccattgatccatgtcttcaattttagttctgcaacaaacatatcatctgttggcttttttcttgttaagatttccattagcataatcccata |
25475194 |
T |
|
| Q |
217 |
gctgtacacat |
227 |
Q |
| |
|
||||||||||| |
|
|
| T |
25475195 |
gctgtacacat |
25475205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 25569626 - 25569831
Alignment:
| Q |
17 |
gctaaactaaaaatagatgacatgtgagtcaatatatcatcaatttggtccccagttatttggactaaatttgaatccatgacctccataatggaattag |
116 |
Q |
| |
|
||||||| ||||||||||||||||| | ||||||| ||||||||||| |||||| || |||||||||||||||||||| |||||||||||| ||||| | |
|
|
| T |
25569626 |
gctaaaccaaaaatagatgacatgtaaatcaatatgtcatcaatttgttccccaatttgttggactaaatttgaatccaagacctccataattgaatttg |
25569725 |
T |
|
| Q |
117 |
gcaatgatcgactgatccatgtcttcacgcttagttctgcaacaaacatatcatctattggctttctctttgtaaagatttccattaccataatcccata |
216 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||| |||| ||||||||||||| |||||||||||| |
|
|
| T |
25569726 |
gcaatgattcactgatccatgtcttcaaacttagttctgcaacaaatatatcatctgttggctttcttcttgtgaagatttccattagcataatcccata |
25569825 |
T |
|
| Q |
217 |
gctgta |
222 |
Q |
| |
|
|||||| |
|
|
| T |
25569826 |
gctgta |
25569831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 23257656 - 23257866
Alignment:
| Q |
17 |
gctaaactaaaaatagatgacatgtgagtcaatatatcatcaatttggtccccagttatttggactaaatttgaatccatgacctccataatggaattag |
116 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||| ||| |||||| | |||||||||||| ||||| | |||||||||||| ||||||| |
|
|
| T |
23257656 |
gctaaaccaaaaatagatgacatgtgagtcaaaatatcatcaagttgttccccaaattgttggactaaattagaatctaagacctccataattgaattag |
23257755 |
T |
|
| Q |
117 |
gcaatgatcgactgatccatgtcttcacgcttagttctgcaacaaacatatcatctattggctttctctttgtaaagatttccattaccataatcccata |
216 |
Q |
| |
|
||||||||| | |||||||||||||| ||||||||| |||| |||||||||||| ||||||||||| |||| ||||||||||||| |||||||||||| |
|
|
| T |
23257756 |
gcaatgatccatcgatccatgtcttcaaacttagttcttcaacgaacatatcatctgttggctttctccttgtgaagatttccattagcataatcccata |
23257855 |
T |
|
| Q |
217 |
gctgtacacat |
227 |
Q |
| |
|
|||||| |||| |
|
|
| T |
23257856 |
gctgtatacat |
23257866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 22901480 - 22901270
Alignment:
| Q |
17 |
gctaaactaaaaatagatgacatgtgagtcaatatatcatcaatttggtccccagttatttggactaaatttgaatccatgacctccataatggaattag |
116 |
Q |
| |
|
||||||| |||||||||||||||| | ||||||| |||||||||| ||||| || ||||||||| | ||||||| ||| |||||||| ||||||| |
|
|
| T |
22901480 |
gctaaaccaaaaatagatgacatgcaactcaatatgtcatcaattttccccccattttgttggactaacctagaatccaagacatccataattgaattag |
22901381 |
T |
|
| Q |
117 |
gcaatgatcgactgatccatgtcttcacgcttagttctgcaacaaacatatcatctattggctttctctttgtaaagatttccattaccataatcccata |
216 |
Q |
| |
|
|||||||| ||||||||||||||||| |||| ||| | ||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
22901380 |
gcaatgattcactgatccatgtcttcaaagttaggtcttctacaaacatatcatctgttggctttcttcttgtaaagatttccattagcataatcccata |
22901281 |
T |
|
| Q |
217 |
gctgtacacat |
227 |
Q |
| |
|
|||||| |||| |
|
|
| T |
22901280 |
gctgtatacat |
22901270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 24885598 - 24885569
Alignment:
| Q |
17 |
gctaaactaaaaatagatgacatgtgagtc |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
24885598 |
gctaaactaaaaatagatgacatgtgagtc |
24885569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 17399 - 17191
Alignment:
| Q |
17 |
gctaaactaaaaatagatgacatgtgagtcaatatatcatcaatttggtccccagttatttggactaaatttgaatccatgacctccataatggaattag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||| |
|
|
| T |
17399 |
gctaaactaaaaatagatgacatgtgagtcgatatatcatcaatttggtccccagttatttggactaaatttgaatccaagagctccataattgaattag |
17300 |
T |
|
| Q |
117 |
gcaatgatcgactgatccatgtcttcacgcttagttctgcaacaaacatatcatctattggctttctctttgtaaagatttccattaccataatcccata |
216 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
17299 |
gcaatgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggctttcttcttgtaaagatttccattagcataatcccata |
17200 |
T |
|
| Q |
217 |
gctgtacac |
225 |
Q |
| |
|
||||||||| |
|
|
| T |
17199 |
gctgtacac |
17191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 10323592 - 10323795
Alignment:
| Q |
19 |
taaactaaaaatagatgacatgtgagtcaatatatcatcaatttggtccccagttatttggactaaatttgaatccatgacctccataatggaattaggc |
118 |
Q |
| |
|
||||||||||||||||||||||||| | ||| |||| |||| |||||| ||| |||||||||||| ||||||| |||||||||||| | ||||||| |
|
|
| T |
10323592 |
taaactaaaaatagatgacatgtgaaacgatagatca---atttcatccccatttagttggactaaattagaatccaagacctccataattgcattaggc |
10323688 |
T |
|
| Q |
119 |
aatgatcgactgatccatgtcttcacgcttagttctgcaacaaacatatcatctattggctttctctttgtaaagatttccattaccataatcccatagc |
218 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||| |||| ||||||||||||| |||||||||||||| |
|
|
| T |
10323689 |
aatgatccactgatccatgtcttcaagcttagttctgcagcaaacatatcatctgttggctttcttcttgtgaagatttccattagcataatcccatagc |
10323788 |
T |
|
| Q |
219 |
tgtacac |
225 |
Q |
| |
|
||||||| |
|
|
| T |
10323789 |
tgtacac |
10323795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0830 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0830
Description:
Target: scaffold0830; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 4850 - 4639
Alignment:
| Q |
16 |
agctaaactaaaaatagatgacatgtgagtcaatatatcatcaatttggtccccagttatttggactaaatttgaatccatgacctccataatggaatta |
115 |
Q |
| |
|
|||||||| ||||||||||||||| ||| |||||||||||||| ||| ||| || || |||||||||||||||||||| ||||| |||||| |||||| |
|
|
| T |
4850 |
agctaaaccaaaaatagatgacatatgaatcaatatatcatcagtttcttcctcaatttgttggactaaatttgaatccaagaccttcataattgaatta |
4751 |
T |
|
| Q |
116 |
ggcaatgatcgactgatccatgtcttcacgcttagttctgcaacaaacatatcatctattggctttctctttgtaaagatttccattaccataatcccat |
215 |
Q |
| |
|
||||||||| | ||||||||| |||| ||||||||||||||||||||||||||| |||||||||| | || ||||||||||||| ||||||||||| |
|
|
| T |
4750 |
ggcaatgattcattgatccatgatttcaaacttagttctgcaacaaacatatcatctgttggctttcttctggtgaagatttccattagcataatcccat |
4651 |
T |
|
| Q |
216 |
agctgtacacat |
227 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4650 |
agctgtacacat |
4639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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