View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5067_low_3 (Length: 582)

Name: NF5067_low_3
Description: NF5067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5067_low_3
NF5067_low_3
[»] chr3 (12 HSPs)
chr3 (8-566)||(23036383-23036942)
chr3 (8-566)||(23039254-23039819)
chr3 (8-564)||(23146135-23146694)
chr3 (353-563)||(23024488-23024698)
chr3 (321-561)||(23032917-23033157)
chr3 (336-563)||(23140262-23140489)
chr3 (353-563)||(23148974-23149184)
chr3 (343-557)||(23017284-23017498)
chr3 (8-167)||(23017869-23018028)
chr3 (8-189)||(23033451-23033625)
chr3 (74-167)||(23149496-23149589)
chr3 (366-470)||(22832145-22832249)
[»] chr6 (2 HSPs)
chr6 (346-564)||(21780028-21780246)
chr6 (8-201)||(21780514-21780709)
[»] scaffold0554 (2 HSPs)
scaffold0554 (342-564)||(6317-6539)
scaffold0554 (70-168)||(5803-5901)
[»] chr1 (3 HSPs)
chr1 (365-564)||(12610120-12610319)
chr1 (351-453)||(12637324-12637426)
chr1 (348-564)||(15885531-15885747)
[»] scaffold0059 (1 HSPs)
scaffold0059 (351-467)||(62465-62581)
[»] chr8 (2 HSPs)
chr8 (401-458)||(23610538-23610595)
chr8 (366-470)||(5593816-5593920)


Alignment Details
Target: chr3 (Bit Score: 492; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 8 - 566
Target Start/End: Complemental strand, 23036942 - 23036383
Alignment:
Q  8 acatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatgatcaaggtaaagtggaagaagatctggtagacgttctgttaaattacgagga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||| ||||||||||||||    
T  23036942 acatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatgatcaaggtagagtagaagaagatctcgtagacgttctcttaaattacgagga 23036843  T
Q  108 tggtagaaaccaagacctttccttgacaaaaaacaatatcaaggccataatcatggtaagcgaattaactttccaaatacttcgaagaagaaaaactact 207  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23036842 tggcagaaaccaagacctttccttgacaaaaaacaatatcaaggccataataatggtaagcgaattaactttccaaatacttcgaagaagaaaaactact 23036743  T
Q  208 tttcaaaagaaaaatttaggtgaatagttaaaatctgcttgcatcttatatctctactctgtagcattggatgctatttgttagtt-tctttttatatat 306  Q
    || |||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |  ||||| |||||||||||||    
T  23036742 ttacaaaagaaaaatttagatgaataattaaaatctgctcgcatcttatatctctactctgtagcattggatgctatctactagttgtctttttatatat 23036643  T
Q  307 cgccttaaacattcttggatttgcttgaacttactgatagctacttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattggg 406  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23036642 cgccttaaagattcttggatttgcttgaacttactgatagctacttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattggg 23036543  T
Q  407 caatggcagaaatggtaaggaatccaagaataatgaagaaagcacaagctgaggtgagagaggttttcaaaatgaaaggaagggtcgaagagaattgtat 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23036542 caatggcagaaatggtaaggaatccaagaataatgaagaaagcacaagctgaggtgagagaggttttcaaaatgaaaggaagggtcgaagagaattgtat 23036443  T
Q  507 caacaaactcatttatttgaaatcagtcgtcaaagaaaccctgaggttacaccctccaac 566  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23036442 caacgaactcatttatttgaaatcagtcgtcaaagaaaccctgaggttacaccctccaac 23036383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 566
Target Start/End: Complemental strand, 23039819 - 23039254
Alignment:
Q  8 acatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatgatcaaggtaaagtggaagaagatctggtagacgttctgttaaattacgagga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| || |||||    
T  23039819 acatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatgatcaaggtaaagtagaagaagatctcgtagacgttctcttaaaatatgagga 23039720  T
Q  108 tggtagaaaccaagacctttccttgacaaaaaacaatatcaaggccataatcatggtaagcgaattaactt--tccaaatac-ttcgaagaagaaaaact 204  Q
     ||||| ||||| ||  || |||| ||||||||||||||||||||||||||| |||||||| ||||||| |  | ||||||| ||| |||| ||||||||    
T  23039719 cggtagcaaccaggagtttaccttaacaaaaaacaatatcaaggccataatcctggtaagcaaattaacctctttcaaatacattcaaaga-gaaaaact 23039621  T
Q  205 acttttcaaaagaaaaatttaggtgaatagttaaaatctgcttgcatcttatatctctactctgtagcattggatgctatttgttagtt-tctttttata 303  Q
      ||| |   || ||||||||  |  ||| | |||| || |  ||||||||||| | |  | |||| ||||||||||||  ||   ||| ||||||||||    
T  23039620 tgtttactccagtaaaatttaaatttatattgaaaaccttcccgcatcttatatttattgtttgtaacattggatgctacatgcatgttgtctttttata 23039521  T
Q  304 tatcgccttaaacattcttggatt----tgcttgaacttactgatagctacttttcaggacatttttggtgctggaggtgagacatcagcaagcaccata 399  Q
    |||| | ||| |||||||||||||    ||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23039520 tatcactttagacattcttggattagcttgcttgaccttattgatagctacttttcaggacgtttttggtgctggaggtgagacatcagcaagcaccata 23039421  T
Q  400 gattgggcaatggcagaaatggtaaggaatccaagaataatgaagaaagcacaagctgaggtgagagaggttttcaaaatgaaaggaagggtcgaagaga 499  Q
    || |||||||||| ||||||| ||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || || |    
T  23039420 gactgggcaatggtagaaatgataagggatccaagaataatgaagaaagcgcaagatgaggtgagagaggttttcaaaatgaaaggaagggttgatgaaa 23039321  T
Q  500 attgtatcaacaaactcatttatttgaaatcagtcgtcaaagaaaccctgaggttacaccctccaac 566  Q
    |||| |||||  |||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  23039320 attgcatcaatgaactcaattatttgaagtcagttgtcaaagaaaccctgaggttacaccctccaac 23039254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 8 - 564
Target Start/End: Complemental strand, 23146694 - 23146135
Alignment:
Q  8 acatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatgatcaaggtaaagtggaagaagatctggtagacgttctgttaaattacgagga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||| || |||||    
T  23146694 acatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatgatcaaggtaaagtagaagaagatctgatagacgttctcttaaaatatgagga 23146595  T
Q  108 tggtagaaaccaagacctttccttgacaaaaaacaatatcaaggccataatcatggtaagcgaattaa-ct-ttccaaatac-ttcgaagaagaaaaact 204  Q
     ||||| ||||| ||  || |||| ||||||||||||||||||||||||||| |||||||| |||||| || |||||||||| ||| |||| ||||||||    
T  23146594 cggtagcaaccaggagtttaccttaacaaaaaacaatatcaaggccataatcctggtaagcaaattaatctcttccaaatacattcaaaga-gaaaaact 23146496  T
Q  205 acttttcaaaagaaaaatttaggtgaatagttaaaatctgcttgcatcttatatctctactctgtagcattggatgctatttgttagttt-ctttttata 303  Q
      ||| |   || ||||||||  |    | | |||| || |   |||||||||| ||   |||||||| ||||||||||| ||   |||  |||||||||    
T  23146495 tgtttactccagtaaaatttaaattttaattgaaaaccttcccacatcttatatgtcatatctgtagcgttggatgctatatgcatgttgactttttata 23146396  T
Q  304 tatcgccttaaacattcttggatttgcttgaacttactgatagctacttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagatt 403  Q
    |||| | | | ||||||||||||| |||| | |||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23146395 tatcacttaagacattcttggattagcttaaccttattgatagctactttacaggacatttttgctgctggaggtgagacatcagcaagcaccatagatt 23146296  T
Q  404 gggcaatggcagaaatggtaaggaatccaagaataatgaagaaagcacaagctgaggtgagagaggttttcaaaatgaaaggaagggtcgaagagaattg 503  Q
    ||||||||| |||| |||||| | |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| || || |||||    
T  23146295 gggcaatggtagaattggtaaaggatccaagaatcatgaagaaagcacaagatgaggtgagagaggttttcaaaatgaaaggaagggttgatgaaaattg 23146196  T
Q  504 tatcaacaaactcatttatttgaaatcagtcgtcaaagaaaccctgaggttacaccctcca 564  Q
     |||||  |||||| ||||||||||| ||| |||||||||||| | ||| |||||||||||    
T  23146195 catcaatgaactcaattatttgaaattagttgtcaaagaaaccttaaggctacaccctcca 23146135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 353 - 563
Target Start/End: Complemental strand, 23024698 - 23024488
Alignment:
Q  353 ttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataatgaagaaagcaca 452  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23024698 ttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaagaatccaagaataatgaagaaagcaca 23024599  T
Q  453 agctgaggtgagagaggttttcaaaatgaaaggaagggtcgaagagaattgtatcaacaaactcatttatttgaaatcagtcgtcaaagaaaccctgagg 552  Q
    |||||||||| ||||| ||||||| |||||||||||||| |||||||||||||||||  |||| | ||||||||||||| | ||||||||||||||||||    
T  23024598 agctgaggtgcgagagattttcaatatgaaaggaagggttgaagagaattgtatcaatgaacttaattatttgaaatcaattgtcaaagaaaccctgagg 23024499  T
Q  553 ttacaccctcc 563  Q
    |||||||||||    
T  23024498 ttacaccctcc 23024488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 321 - 561
Target Start/End: Complemental strand, 23033157 - 23032917
Alignment:
Q  321 ttggatttgcttgaacttactgatagctacttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatg 420  Q
    ||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||    
T  23033157 ttggatttggttgaccttattgatagctacttttcaggacatttttggtgctggaggcgagacatcagcaagcaccatagattgggcgatgacagaaatg 23033058  T
Q  421 gtaaggaatccaagaataatgaagaaagcacaagctgaggtgagagaggttttcaaaatgaaaggaagggtcgaagagaattgtatcaacaaactcattt 520  Q
     ||||  ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || || ||||  |||  | | |||| ||    
T  23033057 ataagagatcaacgaataatgaagaaagcacaagctgaggtgagagaggttttcaaaatgaaaggaaaggttgatgaaaattacatccccgatctcaatt 23032958  T
Q  521 atttgaaatcagtcgtcaaagaaaccctgaggttacaccct 561  Q
    |||||||||||||||||||||||||||| ||||| ||||||    
T  23032957 atttgaaatcagtcgtcaaagaaacccttaggttccaccct 23032917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 336 - 563
Target Start/End: Complemental strand, 23140489 - 23140262
Alignment:
Q  336 cttactgatagctacttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaaga 435  Q
    |||| |||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||    
T  23140489 cttagtgatagttattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaaga 23140390  T
Q  436 ataatgaagaaagcacaagctgaggtgagagaggttttcaaaatgaaaggaagggtcgaagagaattgtatcaacaaactcatttatttgaaatcagtcg 535  Q
    |||||||||||||  |||| |||||||||||||||||||||||||||||||||||| || || ||||| |||||| | |||  ||||||||||||| |||    
T  23140389 ataatgaagaaagtgcaagatgaggtgagagaggttttcaaaatgaaaggaagggttgatgaaaattgcatcaacgagctccattatttgaaatcaatcg 23140290  T
Q  536 tcaaagaaaccctgaggttacaccctcc 563  Q
    ||||||||||| ||||||||||| ||||    
T  23140289 tcaaagaaaccttgaggttacacactcc 23140262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 353 - 563
Target Start/End: Complemental strand, 23149184 - 23148974
Alignment:
Q  353 ttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataatgaagaaagcaca 452  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||| | |||||||||||||||||||||||||    
T  23149184 ttcaggacatttttggtgctggaggcgagacatcagcaagcaccatagattgggcaatggtagagatggtaaaggatccaagaataatgaagaaagcaca 23149085  T
Q  453 agctgaggtgagagaggttttcaaaatgaaaggaagggtcgaagagaattgtatcaacaaactcatttatttgaaatcagtcgtcaaagaaaccctgagg 552  Q
    || |||||||||||||||||||||||||||||||| ||| || || ||||| |||||  |||||| ||||||||||| ||| |||||||||||| | |||    
T  23149084 agatgaggtgagagaggttttcaaaatgaaaggaaaggttgatgaaaattgcatcaatgaactcaattatttgaaattagttgtcaaagaaaccttaagg 23148985  T
Q  553 ttacaccctcc 563  Q
     ||||||||||    
T  23148984 ctacaccctcc 23148974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 343 - 557
Target Start/End: Complemental strand, 23017498 - 23017284
Alignment:
Q  343 atagctacttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataatga 442  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||  ||||||| |||||||||||||||||||||    
T  23017498 atagctacttttcaggacattttcggtggtggaggtgagacatcagcaagcaccacagattgggcaatgatagaaatgataaggaatccaagaataatga 23017399  T
Q  443 agaaagcacaagctgaggtgagagaggttttcaaaatgaaaggaagggtcgaagagaattgtatcaacaaactcatttatttgaaatcagtcgtcaaaga 542  Q
    |||||||||||| ||| ||||| || ||| | |||||||||||| |||| || || || || || ||  |||||| |||| |||||||||| ||||||||    
T  23017398 agaaagcacaagatgaagtgagggatgttataaaaatgaaaggacgggttgatgaaaaatgcataaatgaactcagttatctgaaatcagttgtcaaaga 23017299  T
Q  543 aaccctgaggttaca 557  Q
    |||||| || |||||    
T  23017298 aacccttagattaca 23017284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 8 - 167
Target Start/End: Complemental strand, 23018028 - 23017869
Alignment:
Q  8 acatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatgatcaaggtaaagtggaagaagatctggtagacgttctgttaaattacgagga 107  Q
    |||||||  |||| ||||||  ||||||||||||||||| ||||| |||||||||| | || | |||||||||||||||| |||| ||||| || |||||    
T  23018028 acatcattgatgaacataaaagggaaaagtacacaaaagtcaaaggtgatcaaggtgaggtagcagaagatctggtagacattctcttaaaatatgagga 23017929  T
Q  108 tggtagaaaccaagacctttccttgacaaaaaacaatatcaaggccataatcatggtaag 167  Q
    ||||||  |||||||  | || || |||||| |||||||||||||||||||| |||||||    
T  23017928 tggtagtgaccaagatttctcattaacaaaagacaatatcaaggccataatcttggtaag 23017869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 8 - 189
Target Start/End: Complemental strand, 23033625 - 23033451
Alignment:
Q  8 acatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatgatcaaggtaaagtggaagaagatctggtagacgttctgttaaattacgagga 107  Q
    |||||||| ||||||||||| ||| |||||||||||| |||         |||||||| || | |||||||||||||||| |||| ||||| || |||||    
T  23033625 acatcatcgatgagcataaaaaggcaaagtacacaaacgcc---------caaggtaaggtagtagaagatctggtagacattctcttaaaatatgagga 23033535  T
Q  108 tggtagaaaccaagacctttccttgacaaaaaacaatatcaaggccataatcatggtaagcg-aattaact-ttccaaatactt 189  Q
    ||||||  |||||||  | | ||| |||||| ||||||||||||| |||||| ||||||||| ||| |||| ||||||||||||    
T  23033534 tggtagtgaccaagatttcttcttaacaaaagacaatatcaaggctataatcttggtaagcgtaataaactcttccaaatactt 23033451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 167
Target Start/End: Complemental strand, 23149589 - 23149496
Alignment:
Q  74 aagatctggtagacgttctgttaaattacgaggatggtagaaaccaagacctttccttgacaaaaaacaatatcaaggccataatcatggtaag 167  Q
    ||||||||||||| |||||  |||| || || ||||| || ||| | ||  ||| |||||| ||| |||||||||||||||||||| |||||||    
T  23149589 aagatctggtagatgttctcataaaatatgaagatggcagcaacaaggaatttttcttgaccaaagacaatatcaaggccataatcttggtaag 23149496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 470
Target Start/End: Complemental strand, 22832249 - 22832145
Alignment:
Q  366 tggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataatgaagaaagcacaagctgaggtgaga 465  Q
    ||||| |||| ||||||||||||| |  ||||||   ||||| |||||||| ||| | |  ||||| | ||||||| |||||| |||||||||||| |||    
T  22832249 tggtggtggaagtgagacatcagctacaaccataacatgggcgatggcagagatgattaaaaatcccaaaataatggagaaagtacaagctgaggtaaga 22832150  T
Q  466 gaggt 470  Q
    |||||    
T  22832149 gaggt 22832145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 346 - 564
Target Start/End: Complemental strand, 21780246 - 21780028
Alignment:
Q  346 gctacttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataatgaaga 445  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  21780246 gctacttttcaggacatgtttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatggtaagggatccaagaataatgaaga 21780147  T
Q  446 aagcacaagctgaggtgagagaggttttcaaaatgaaaggaagggtcgaagagaattgtatcaacaaactcatttatttgaaatcagtcgtcaaagaaac 545  Q
    ||||||||| ||| |||||||| ||||||||||||||||||||||| || || ||||| |||||  |||||| ||||||||||||||| |||||||||||    
T  21780146 aagcacaagatgaagtgagagaagttttcaaaatgaaaggaagggttgatgaaaattgcatcaatgaactcaattatttgaaatcagttgtcaaagaaac 21780047  T
Q  546 cctgaggttacaccctcca 564  Q
    | | ||| |||||||||||    
T  21780046 cttaaggctacaccctcca 21780028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 21780709 - 21780514
Alignment:
Q  8 acatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatgatcaaggtaaagtggaagaagatctggtagacgttctgttaaattacgagga 107  Q
    |||||||||| || |||||||||| |||| |||||||| | ||||| ||| ||||| |||| ||||||||||| ||||||||||| ||||| || |||||    
T  21780709 acatcatcaaggaccataaagaggcaaagcacacaaaaccgaaagaagatgaaggtgaagtagaagaagatctcgtagacgttctcttaaaatatgagga 21780610  T
Q  108 tggtagaaaccaagacctttccttgacaaaaaacaatatcaaggccataatcatggtaagcgaattaa-ct-ttccaaatacttcgaagaagaaaa 201  Q
    |||||| ||||  ||  ||||||| |||||| ||||||||||||||||||| ||||||||| |||||| || ||||||||||||||||||||||||    
T  21780609 tggtagcaacctggatttttccttaacaaaagacaatatcaaggccataataatggtaagccaattaatctcttccaaatacttcgaagaagaaaa 21780514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 131; Significance: 1e-67; HSPs: 2)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 342 - 564
Target Start/End: Original strand, 6317 - 6539
Alignment:
Q  342 gatagctacttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataatg 441  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||| | ||||||||||||    
T  6317 gatagctactttttaggacatttttggtgctggaggtgatacatcagcaaccaccatagattgggcaatggcagaaatgataagggagccaagaataatg 6416  T
Q  442 aagaaagcacaagctgaggtgagagaggttttcaaaatgaaaggaagggtcgaagagaattgtatcaacaaactcatttatttgaaatcagtcgtcaaag 541  Q
    | ||||||||||||||||||| |||| ||||| | | |||| |||| ||| || || ||||  || | |||||||| |||||||||||||||||||||||    
T  6417 atgaaagcacaagctgaggtgcgagaagtttttacattgaatggaaaggttgatgaaaattacattagcaaactcaattatttgaaatcagtcgtcaaag 6516  T
Q  542 aaaccctgaggttacaccctcca 564  Q
    ||||||| |||||||||||||||    
T  6517 aaacccttaggttacaccctcca 6539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 70 - 168
Target Start/End: Original strand, 5803 - 5901
Alignment:
Q  70 gaagaagatctggtagacgttctgttaaattacgaggatggtagaaaccaagacctttccttgacaaaaaacaatatcaaggccataatcatggtaagc 168  Q
    |||||||||||  |||||||||| ||||| || || |||||||| ||| | ||  ||||||| |||||| |||||||||| ||||| ||||||||||||    
T  5803 gaagaagatctattagacgttctcttaaaatatgaagatggtagcaacaaggagttttccttaacaaaagacaatatcaaagccattatcatggtaagc 5901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 365 - 564
Target Start/End: Complemental strand, 12610319 - 12610120
Alignment:
Q  365 ttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataatgaagaaagcacaagctgaggtgag 464  Q
    |||||||||||||||| ||||||||    || |||| |||||||||| ||||  |||||||| ||  |||| | |||||||||||||||| |||||| ||    
T  12610319 ttggtgctggaggtgatacatcagcttctactatagtttgggcaatgtcagagttggtaagggataaaagagtgatgaagaaagcacaagatgaggtaag 12610220  T
Q  465 agaggttttcaaaatgaaaggaagggtcgaagagaattgtatcaacaaactcatttatttgaaatcagtcgtcaaagaaaccctgaggttacaccctcca 564  Q
    |||  | ||||| ||||||||||  || ||||| |||||||| ||  |||||| |||||| || ||||| || ||||| ||| | |||||||| ||||||    
T  12610219 agatatattcaacatgaaaggaaatgttgaagaaaattgtataaatgaactcacttatttaaagtcagttgtgaaagagaccttaaggttacatcctcca 12610120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 453
Target Start/End: Complemental strand, 12637426 - 12637324
Alignment:
Q  351 ttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataatgaagaaagca 450  Q
    ||||||||||||  |||||||||||||||| |||||| | |  ||||||| |||||||||||||||  | |||||| |||||||| | ||||||||||||    
T  12637426 ttttcaggacatcattggtgctggaggtgaaacatcatccactaccatagtttgggcaatggcagagttagtaagggatccaagagtgatgaagaaagca 12637327  T
Q  451 caa 453  Q
    |||    
T  12637326 caa 12637324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 348 - 564
Target Start/End: Original strand, 15885531 - 15885747
Alignment:
Q  348 tacttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataatgaagaaa 447  Q
    ||||||||||||||| |||||||||||||| || |||||    | |||||||| |||||||||||||||  |||||||| ||  |||| | |||||||||    
T  15885531 tacttttcaggacatgtttggtgctggaggagatacatcgagtaccaccatagtttgggcaatggcagagttggtaagggatgaaagagtgatgaagaaa 15885630  T
Q  448 gcacaagctgaggtgagagaggttttcaaaatgaaaggaagggtcgaagagaattgtatcaacaaactcatttatttgaaatcagtcgtcaaagaaaccc 547  Q
    ||||||| ||| || |||||  | ||||| |  |||||||  || |  ||||| | ||| ||  | |||| ||||||||| ||||| || ||||| |||     
T  15885631 gcacaagatgaagtaagagaaatgttcaacacaaaaggaattgttggtgagaactatattaatgagctcacttatttgaagtcagttgtgaaagagacct 15885730  T
Q  548 tgaggttacaccctcca 564  Q
    | |||||||||||||||    
T  15885731 taaggttacaccctcca 15885747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 351 - 467
Target Start/End: Complemental strand, 62581 - 62465
Alignment:
Q  351 ttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataatgaagaaagca 450  Q
    |||||||||||| ||||||||||||||||| ||||||||    | | ||| |||||||||||||||  |||||||  |||||||| | ||||||||||||    
T  62581 ttttcaggacatgtttggtgctggaggtgatacatcagctttgagcgtagtttgggcaatggcagagttggtaagagatccaagagtgatgaagaaagca 62482  T
Q  451 caagctgaggtgagaga 467  Q
    |||| ||| ||||||||    
T  62481 caagatgaagtgagaga 62465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 458
Target Start/End: Complemental strand, 23610595 - 23610538
Alignment:
Q  401 attgggcaatggcagaaatggtaaggaatccaagaataatgaagaaagcacaagctga 458  Q
    ||||||||||||| || ||| ||| | ||||||||||  |||||||||||||||||||    
T  23610595 attgggcaatggctgagatgataaaggatccaagaattttgaagaaagcacaagctga 23610538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 470
Target Start/End: Original strand, 5593816 - 5593920
Alignment:
Q  366 tggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataatgaagaaagcacaagctgaggtgaga 465  Q
    ||||| |||| ||||||||||||| |  ||||||   ||||| |||||||| ||| | |  ||||| | ||||||| |||||| |||||||||||| |||    
T  5593816 tggtggtggaagtgagacatcagctacaaccataacatgggcgatggcagagatgattaaaaatcccaaaataatggagaaagtacaagctgaggtaaga 5593915  T
Q  466 gaggt 470  Q
    |||||    
T  5593916 gaggt 5593920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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