View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5067_low_31 (Length: 219)
Name: NF5067_low_31
Description: NF5067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5067_low_31 |
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| [»] scaffold0039 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: scaffold0039 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 43036 - 42828
Alignment:
| Q |
1 |
tttattcaccttcctaccactggtgctgcttatacctggcaaaatggtagaagtggcagaagatttactgaaaggaggttggatagatgtatatgtaatc |
100 |
Q |
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| T |
43036 |
tttattcaccttcctaccactggtgctgcttatacctggcaaaatggtagaagtggcagaagatttattgaaaggaggttggatagatgtatatgtaatc |
42937 |
T |
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| Q |
101 |
aactatggttagatatgtgctcttctatttcagtttctactctgttaaggtcctgctcagatcactatcctctattatttgagtttgaagcaaatcaaca |
200 |
Q |
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| T |
42936 |
aactatggttagatatgtgctcttctatttcagtttctactctgttaaggtcctgctcagatcactatcctttattatttgagtttgaagaaaatcaaca |
42837 |
T |
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| Q |
201 |
caaattcat |
209 |
Q |
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||||||||| |
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| T |
42836 |
caaattcat |
42828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 233171 - 233035
Alignment:
| Q |
1 |
tttattcaccttcctaccactggtgctgcttatacctggcaaaatggtagaagtggcagaagatttactgaaaggaggttggatagatgtatatgtaatc |
100 |
Q |
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|||||||| || |||||||||||||| | ||| |||| |||||| || ||||| |||||||| |||||||| || | |||||||| |||||||| | |
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| T |
233171 |
tttattcatctccctaccactggtgcataatttacttggcgaaatggaaggagtggtagaagattcactgaaagaagacttgatagatgcatatgtaacc |
233072 |
T |
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| Q |
101 |
aactatggttagatatgtgctcttctatttcagtttc |
137 |
Q |
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| T |
233071 |
aatcatggttgaatatgtgctcctctatatcagtttc |
233035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 149
Target Start/End: Original strand, 43232622 - 43232743
Alignment:
| Q |
28 |
gcttatacctggcaaaatggtagaagtggcagaagatttactgaaaggaggttggatagatgtatatgtaatcaactatggttagatatgtgctcttcta |
127 |
Q |
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|||| ||| ||||||||||| |||||||| || ||||| |||||||| | || ||||| | ||||| ||||| || ||| | ||||||||| |||||| |
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| T |
43232622 |
gcttttacttggcaaaatgggagaagtggtaggagattcactgaaagaatattagataggagcatatgcaatcagctttggctggatatgtgcacttcta |
43232721 |
T |
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| Q |
128 |
tttcagtttctactctgttaag |
149 |
Q |
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|||| |||| ||||||| |||| |
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| T |
43232722 |
tttctgtttgtactctgctaag |
43232743 |
T |
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