View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5067_low_5 (Length: 485)
Name: NF5067_low_5
Description: NF5067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5067_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 474
Target Start/End: Original strand, 19995837 - 19996292
Alignment:
| Q |
19 |
aagcctcaacgatgttgatgaagttttcttctgtttttcttcactagtttctgttcttcctagaatgagtggtagttggcttcaactccatgtgttcaaa |
118 |
Q |
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||||||||| ||||||||||||||||||||| |||||||||||| || || |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
19995837 |
aagcctcaataatgttgatgaagttttcttctttttttcttcacttgtgtcggttcttcctagaatgagtggtagt-ggcttcaactccatgtgttcaaa |
19995935 |
T |
|
| Q |
119 |
acgtggttccgatggag-tgtgtgagaatttgagtatttttctgtccaaaaatggtaactcattagcctcatgtgtttcacctcttgctattttggccca |
217 |
Q |
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||||||||||||||| | |||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19995936 |
acgtggttccgatgggggtgtgtgagaatttgagcattgttatgtccaaaaatggtaactcattagcctcatgtgtttcacctcttgctattttggccca |
19996035 |
T |
|
| Q |
218 |
tgagttgatgaatctaatggttcctagtccatctgataaagagtgagagcaactaataccaattgcaaggccttcatctttgttttgaaattttgtgagt |
317 |
Q |
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|| ||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||| ||||||||| ||||||||||||||| |||||||||||| |
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| T |
19996036 |
tgtgttgatgaatctaatggctcctagtccatctgataaagagtgagatcaagcaatactaattgcaagatgttcatctttgttttggaattttgtgagt |
19996135 |
T |
|
| Q |
318 |
tgaaccataaacaaaggaatatcttccacaggttgattgtaatcaattgttggaacaagctccatggtggagtcagaaggtgaaaagtcaccataatcat |
417 |
Q |
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||||||| |||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19996136 |
tgaaccagaaacaatggaatatcttccacaggttgactgtaatcaatttttggaacaagctccatggtggagtcagaaggtgaaaagtcaccataatcat |
19996235 |
T |
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| Q |
418 |
gaattgtttttgtggtttcaacttcaagcaaaattgcaccttttgcattgagattca |
474 |
Q |
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| T |
19996236 |
gaattgtttttgtggtttcaacttcaagcaaaattgcaccttttgcattgcgattca |
19996292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 25 - 479
Target Start/End: Original strand, 8323635 - 8324085
Alignment:
| Q |
25 |
caacgatgttgatgaagttttcttctgtttttcttcactagtttctgttcttcctagaatgagtggtagttggcttcaactccatgtgttcaaaacgtgg |
124 |
Q |
| |
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|||| |||||| |||||||||||||| |||||||||||| || ||| ||||||||||||||||||||||| |||||||||||| |||||||||| ||| |
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| T |
8323635 |
caacaatgttgctgaagttttcttctttttttcttcacttgtgtcttttcttcctagaatgagtggtagt-ggcttcaactccttgtgttcaaaccgta- |
8323732 |
T |
|
| Q |
125 |
ttccgatggagtgtgtgagaatttgagtatttttctgtccaaaaatggtaactcattagcctcatgtgtttcacctcttgctattttggcccatgagttg |
224 |
Q |
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|| |||| ||||||||||||||||||||| |||| || ||||| ||||||||||| ||||| | ||||| ||||||||||||||||||||||||||| |
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| T |
8323733 |
--ccaatggcgtgtgtgagaatttgagtattgttctatctaaaaagggtaactcatttacctcaagggtttctcctcttgctattttggcccatgagttg |
8323830 |
T |
|
| Q |
225 |
atgaatctaatggttcctagtccatctgataaagagtgagagcaactaataccaattgcaaggccttcatctttgttttgaaattttgtgagttgaacca |
324 |
Q |
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|||| |||||||| ||| |||||||||||||||| |||||| || ||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
8323831 |
atgagtctaatggctccaagtccatctgataaagggtgagaataagcaataccaattgcaagaccttcatctttgttttgaaatcttgtgagttgaacca |
8323930 |
T |
|
| Q |
325 |
taaacaaaggaatatcttccacaggttgattgtaatcaattgttggaacaagctccatggtggagtcagaaggtgaaaagtcaccataatcatgaattgt |
424 |
Q |
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|||||| |||||||||||||| |||||||||||||| ||| ||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| |
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| T |
8323931 |
caaacaatggaatatcttccactggttgattgtaatctattattggaacaagctccatggttgaatcagaaggtgaaaaatcaccataatcatgaattgt |
8324030 |
T |
|
| Q |
425 |
ttttgtggtttcaacttcaagcaaaattgcaccttttgcattgagattcatctct |
479 |
Q |
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||||||||||||| ||||||||||||| |||||||||||||||||||||| |||| |
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| T |
8324031 |
ttttgtggtttcagcttcaagcaaaatagcaccttttgcattgagattcaactct |
8324085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 177 - 474
Target Start/End: Complemental strand, 18273029 - 18272732
Alignment:
| Q |
177 |
tcattagcctcatgtgtttcacctcttgctattttggcccatgagttgatgaatctaatggttcctagtccatctgataaagagtgagagcaactaatac |
276 |
Q |
| |
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||||||| ||| |||||||||||||||| |||||||||||||||||||| || ||| || | |||||||||||| ||||| || ||| | |
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| T |
18273029 |
tcattaggctctagtgtttcacctcttgcaattttggcccatgagttgataaagtcaatacaaccaacaccatctgataaaagatgagaataagcaattc |
18272930 |
T |
|
| Q |
277 |
caattgcaaggccttcatctttgttttgaaattttgtgagttgaaccataaacaaaggaatatcttccacaggttgattgtaatcaattgttggaacaag |
376 |
Q |
| |
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||||||||| || |||||| |||||| ||||| ||||||||||||| | |||||| || || ||||| | |||| |||||||||| | |||||| ||| |
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| T |
18272929 |
caattgcaaagctttcatcattgtttcgaaatcttgtgagttgaacaacaaacaatggcatttcttcaattggtttgttgtaatcaacttttggaataag |
18272830 |
T |
|
| Q |
377 |
ctccatggtggagtcagaaggtgaaaagtcaccataatcatgaattgtttttgtggtttcaacttcaagcaaaattgcaccttttgcattgagattca |
474 |
Q |
| |
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||| |||||||||||||||||| ||||||||||||||||||||| |||||| | ||||| |||| | |||||| || ||||||||||||||||||| |
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| T |
18272829 |
ctctttggtggagtcagaaggtgcaaagtcaccataatcatgaatactttttgagctttcagcttctatcaaaatagctccttttgcattgagattca |
18272732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 326 - 474
Target Start/End: Original strand, 18317783 - 18317931
Alignment:
| Q |
326 |
aaacaaaggaatatcttccacaggttgattgtaatcaattgttggaacaagctccatggtggagtcagaaggtgaaaagtcaccataatcatgaattgtt |
425 |
Q |
| |
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|||||| ||||| ||||| | |||||||| ||||||| | |||||| |||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
18317783 |
aaacaatggaatttcttcaatgggttgattataatcaacttttggaataagctctttggtggagtcagaaggtgaaaagtcaccataatcatgaatactt |
18317882 |
T |
|
| Q |
426 |
tttgtggtttcaacttcaagcaaaattgcaccttttgcattgagattca |
474 |
Q |
| |
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|||||||||||| |||| | ||||| || ||||||||||||||||||| |
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| T |
18317883 |
tttgtggtttcagcttctattaaaatagctccttttgcattgagattca |
18317931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 73 - 226
Target Start/End: Original strand, 18317537 - 18317689
Alignment:
| Q |
73 |
tcttcctagaatgagtggtagttggcttcaactccatgtgttcaaaacgtggttccgatggagtgtgtgagaatttgagtatttttctgtccaaaaatgg |
172 |
Q |
| |
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|||||||||||||||||||||| ||||||||||| | |||||| ||||||||||| || |||| ||||||||| |||||| |||| || ||| | || |
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| T |
18317537 |
tcttcctagaatgagtggtagt-ggcttcaactctacgtgttcgaaacgtggttcaataggggtgtttgagaatttcagtattgttctatctaaataagg |
18317635 |
T |
|
| Q |
173 |
taactcattagcctcatgtgtttcacctcttgctattttggcccatgagttgat |
226 |
Q |
| |
|
||| ||||||||||| || ||||||||||||||||||| |||||||||||||| |
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|
| T |
18317636 |
taattcattagcctctagtctttcacctcttgctattttagcccatgagttgat |
18317689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 73 - 155
Target Start/End: Complemental strand, 18315336 - 18315255
Alignment:
| Q |
73 |
tcttcctagaatgagtggtagttggcttcaactccatgtgttcaaaacgtggttccgatggagtgtgtgagaatttgagtatt |
155 |
Q |
| |
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|||||||| ||||| ||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
18315336 |
tcttcctataatgaatggtagt-ggcttcaactccatgtgttcaaaacgtggttcaattggggtgtgtgagaatttgagtatt |
18315255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 365
Target Start/End: Complemental strand, 3507930 - 3507871
Alignment:
| Q |
306 |
aattttgtgagttgaaccataaacaaaggaatatcttccacaggttgattgtaatcaatt |
365 |
Q |
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||||||||||||||||| || |||||||| || ||||||| |||||| ||||||||||| |
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|
| T |
3507930 |
aattttgtgagttgaactatcaacaaagggatttcttccaagggttgagtgtaatcaatt |
3507871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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