View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5067_low_6 (Length: 463)
Name: NF5067_low_6
Description: NF5067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5067_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 440
Target Start/End: Complemental strand, 34745953 - 34745528
Alignment:
| Q |
18 |
agccacaccatttccgaggagcctagttttgacagtattggtaatggtggcgacactatttaacaacaacaac--gtagtgaagaacaaataatctaagc |
115 |
Q |
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| T |
34745953 |
agccacaccatttccgaggagcctagttttgacggtattggtaatggtggcgacactatttaacaacaacaacctgtagtgaagaacaaataatctaagc |
34745854 |
T |
|
| Q |
116 |
gctcctagtttaaggtttgaagaactgtaacttattttgcagaaatgtatgtggtgcatcctcatccataataatgtggcccttataattgacattgctg |
215 |
Q |
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| T |
34745853 |
gctcctagtttaaggtttgaagaactgtaacttattttgcagaaatgtatgtggtgcatcctcatccataataatgtggcccttataatcgacattgctg |
34745754 |
T |
|
| Q |
216 |
aa-tgaaatagctcatcttttgagttgaaaac-aaataataaagaatcttatgatgaattattgcaatattttcatgctaaaatgatactcattttcgaa |
313 |
Q |
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|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
34745753 |
aactgaaatagctcatcttttgagttgaaaacaaaataataaagaatcttatgatgaattattgcaatattttcatgctaaaatggtactcattttggaa |
34745654 |
T |
|
| Q |
314 |
ttcttttaatgtttcgtgttt-aaaatcacgacgagttagacaaaatcacaatagcatcatgattttgttgaaattttgannnnnnnnnnngccaaactt |
412 |
Q |
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| T |
34745653 |
ttcttttaatgtttcgtgtttcaaaatcacgacgagttagacaaaatcacaatagcatcatgattttgttgaaattccga--tttttttttgccaaactt |
34745556 |
T |
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| Q |
413 |
accataatttcaaacatgccataatgtt |
440 |
Q |
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| T |
34745555 |
accataatttcaaacatgccataatgtt |
34745528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 67 - 295
Target Start/End: Complemental strand, 34735100 - 34734873
Alignment:
| Q |
67 |
gcgacactatttaacaacaacaac--gtagtgaagaacaaataatctaagcg-ctc-ctagtttaaggtttgaagaactgtaacttattttgcagaaatg |
162 |
Q |
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|||||| ||||||||| ||||||| ||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
34735100 |
gcgacaatatttaacagcaacaacctgtagtgaagaacaaataatctaagctactagctagtttatggtttgaagaactgtaacttattttgcacaaatg |
34735001 |
T |
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| Q |
163 |
tatgtggtgcatcctcatccataataatgtggcccttataattgacattgctgaa-tgaaatagctcatcttttgagttgaaaacaaataataaagaatc |
261 |
Q |
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| T |
34735000 |
catgtggtgcatcctcagacataattatgtgtcccttagaattgactttgctgaattgaaatagctcatc-tttgagtcgta---aaata--aaataaaa |
34734907 |
T |
|
| Q |
262 |
ttatgatgaattattgcaatattttcatgctaaa |
295 |
Q |
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| T |
34734906 |
ttatgatgaattattgcaacattttcatgctaaa |
34734873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 388
Target Start/End: Complemental strand, 34734813 - 34734780
Alignment:
| Q |
355 |
aaaatcacaatagcatcatgattttgttgaaatt |
388 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
34734813 |
aaaatcacaataacatcatgattttgttgaaatt |
34734780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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