View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5067_low_7 (Length: 453)
Name: NF5067_low_7
Description: NF5067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5067_low_7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 14 - 453
Target Start/End: Complemental strand, 44708946 - 44708505
Alignment:
| Q |
14 |
agactatacaacctaaggccacgtattgggtatgagtaagagagaatctaaaatgtgttgccagctatgaatttgaaggatgaaagctttttctcagggt |
113 |
Q |
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| T |
44708946 |
agactatacaacctaaggccacgtattgggtatgagtaagagagaatctaaaatgtgttgccagctatgaatttgaaggatgaaagctttttctcagggt |
44708847 |
T |
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| Q |
114 |
caaagctgtcatattttctttcaaacccnnnnnnnnnnnnnnnnaattaacctacgtctctctattattttcattgtatttttattatgacatgaaaatc |
213 |
Q |
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| T |
44708846 |
caaagctgtcatattttctttcaaaccctttttttttttttt--aattaacctacgtctctctattattttcattgtatttttattatgacatgaaaatc |
44708749 |
T |
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| Q |
214 |
catatactagatactactact---------catatataaaatcctccattcgtttctcatttcttatatttccctcaccaagaattctctctttcttgtt |
304 |
Q |
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| T |
44708748 |
catatactaaatactactactactactactcatatataaaatcctccattcgtttctcatttcttatatttccctcaccaagaattctctctttcttgtt |
44708649 |
T |
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| Q |
305 |
cctcctcttatataatataatcatctcccttcattttttcagtacatatattttgtgcttgttttgattagaggagagtgagaagagaaagaagaaaacc |
404 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44708648 |
cctcctcttatataat-----cctctcccttcattttttcagtacatatattatgtgcttgttttgattagaggagagtgagaagagaaagaagaaaacc |
44708554 |
T |
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| Q |
405 |
agggtttgnnnnnnnttgtcagaacaaaatggcggtgacaactcactct |
453 |
Q |
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| T |
44708553 |
agtgtttgaaaaaaattgacagaacaaaatggcggtgacaactcactct |
44708505 |
T |
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