View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5067_low_8 (Length: 439)
Name: NF5067_low_8
Description: NF5067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5067_low_8 |
 |  |
|
| [»] scaffold0554 (1 HSPs) |
 |  |  |
|
| [»] scaffold0059 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 17 - 423
Target Start/End: Complemental strand, 23036790 - 23036383
Alignment:
| Q |
17 |
atggtaagcgaattaactttccaaatacttcgaagaagaaaaactacttttcaaaagaaaaatttaggtgaatagttaaaatctgcttgcatcttatatc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||| |||||||||||| |
|
|
| T |
23036790 |
atggtaagcgaattaactttccaaatacttcgaagaagaaaaactactttacaaaagaaaaatttagatgaataattaaaatctgctcgcatcttatatc |
23036691 |
T |
 |
| Q |
117 |
tctactctgtagcattggatgctatttgttagtt-tctttttatatatcgccttaaacattcttggatttgcttgaacttactgatagctacttttcagg |
215 |
Q |
| |
|
||||||||||||||||||||||||| | ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23036690 |
tctactctgtagcattggatgctatctactagttgtctttttatatatcgccttaaagattcttggatttgcttgaacttactgatagctacttttcagg |
23036591 |
T |
 |
| Q |
216 |
acatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataatgaagaaagcacaagctga |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23036590 |
acatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataatgaagaaagcacaagctga |
23036491 |
T |
 |
| Q |
316 |
ggtgagagaggttttcaaaatgaaaggaagggtcgaagagaattgtatcaacaaactcatttatttgaaatcagtcgtcaaagaaaccctgaggttacac |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23036490 |
ggtgagagaggttttcaaaatgaaaggaagggtcgaagagaattgtatcaacgaactcatttatttgaaatcagtcgtcaaagaaaccctgaggttacac |
23036391 |
T |
 |
| Q |
416 |
cctccaac |
423 |
Q |
| |
|
|||||||| |
|
|
| T |
23036390 |
cctccaac |
23036383 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 151 - 423
Target Start/End: Complemental strand, 23039530 - 23039254
Alignment:
| Q |
151 |
tctttttatatatcgccttaaacattcttggatt----tgcttgaacttactgatagctacttttcaggacatttttggtgctggaggtgagacatcagc |
246 |
Q |
| |
|
|||||||||||||| | ||| ||||||||||||| ||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23039530 |
tctttttatatatcactttagacattcttggattagcttgcttgaccttattgatagctacttttcaggacgtttttggtgctggaggtgagacatcagc |
23039431 |
T |
 |
| Q |
247 |
aagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataatgaagaaagcacaagctgaggtgagagaggttttcaaaatgaaaggaagg |
346 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| ||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
23039430 |
aagcaccatagactgggcaatggtagaaatgataagggatccaagaataatgaagaaagcgcaagatgaggtgagagaggttttcaaaatgaaaggaagg |
23039331 |
T |
 |
| Q |
347 |
gtcgaagagaattgtatcaacaaactcatttatttgaaatcagtcgtcaaagaaaccctgaggttacaccctccaac |
423 |
Q |
| |
|
|| || || ||||| ||||| |||||| ||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23039330 |
gttgatgaaaattgcatcaatgaactcaattatttgaagtcagttgtcaaagaaaccctgaggttacaccctccaac |
23039254 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 210 - 420
Target Start/End: Complemental strand, 23024698 - 23024488
Alignment:
| Q |
210 |
ttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataatgaagaaagcaca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23024698 |
ttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaagaatccaagaataatgaagaaagcaca |
23024599 |
T |
 |
| Q |
310 |
agctgaggtgagagaggttttcaaaatgaaaggaagggtcgaagagaattgtatcaacaaactcatttatttgaaatcagtcgtcaaagaaaccctgagg |
409 |
Q |
| |
|
|||||||||| ||||| ||||||| |||||||||||||| ||||||||||||||||| |||| | ||||||||||||| | |||||||||||||||||| |
|
|
| T |
23024598 |
agctgaggtgcgagagattttcaatatgaaaggaagggttgaagagaattgtatcaatgaacttaattatttgaaatcaattgtcaaagaaaccctgagg |
23024499 |
T |
 |
| Q |
410 |
ttacaccctcc |
420 |
Q |
| |
|
||||||||||| |
|
|
| T |
23024498 |
ttacaccctcc |
23024488 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 152 - 421
Target Start/End: Complemental strand, 23146404 - 23146135
Alignment:
| Q |
152 |
ctttttatatatcgccttaaacattcttggatttgcttgaacttactgatagctacttttcaggacatttttggtgctggaggtgagacatcagcaagca |
251 |
Q |
| |
|
||||||||||||| | | | ||||||||||||| |||| | |||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23146404 |
ctttttatatatcacttaagacattcttggattagcttaaccttattgatagctactttacaggacatttttgctgctggaggtgagacatcagcaagca |
23146305 |
T |
 |
| Q |
252 |
ccatagattgggcaatggcagaaatggtaaggaatccaagaataatgaagaaagcacaagctgaggtgagagaggttttcaaaatgaaaggaagggtcga |
351 |
Q |
| |
|
|||||||||||||||||| |||| |||||| | |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
23146304 |
ccatagattgggcaatggtagaattggtaaaggatccaagaatcatgaagaaagcacaagatgaggtgagagaggttttcaaaatgaaaggaagggttga |
23146205 |
T |
 |
| Q |
352 |
agagaattgtatcaacaaactcatttatttgaaatcagtcgtcaaagaaaccctgaggttacaccctcca |
421 |
Q |
| |
|
|| ||||| ||||| |||||| ||||||||||| ||| |||||||||||| | ||| ||||||||||| |
|
|
| T |
23146204 |
tgaaaattgcatcaatgaactcaattatttgaaattagttgtcaaagaaaccttaaggctacaccctcca |
23146135 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 178 - 418
Target Start/End: Complemental strand, 23033157 - 23032917
Alignment:
| Q |
178 |
ttggatttgcttgaacttactgatagctacttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatg |
277 |
Q |
| |
|
||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
23033157 |
ttggatttggttgaccttattgatagctacttttcaggacatttttggtgctggaggcgagacatcagcaagcaccatagattgggcgatgacagaaatg |
23033058 |
T |
 |
| Q |
278 |
gtaaggaatccaagaataatgaagaaagcacaagctgaggtgagagaggttttcaaaatgaaaggaagggtcgaagagaattgtatcaacaaactcattt |
377 |
Q |
| |
|
|||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || || |||| ||| | | |||| || |
|
|
| T |
23033057 |
ataagagatcaacgaataatgaagaaagcacaagctgaggtgagagaggttttcaaaatgaaaggaaaggttgatgaaaattacatccccgatctcaatt |
23032958 |
T |
 |
| Q |
378 |
atttgaaatcagtcgtcaaagaaaccctgaggttacaccct |
418 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
23032957 |
atttgaaatcagtcgtcaaagaaacccttaggttccaccct |
23032917 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 193 - 420
Target Start/End: Complemental strand, 23140489 - 23140262
Alignment:
| Q |
193 |
cttactgatagctacttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaaga |
292 |
Q |
| |
|
|||| |||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |
|
|
| T |
23140489 |
cttagtgatagttattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaaga |
23140390 |
T |
 |
| Q |
293 |
ataatgaagaaagcacaagctgaggtgagagaggttttcaaaatgaaaggaagggtcgaagagaattgtatcaacaaactcatttatttgaaatcagtcg |
392 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || || ||||| |||||| | ||| ||||||||||||| ||| |
|
|
| T |
23140389 |
ataatgaagaaagtgcaagatgaggtgagagaggttttcaaaatgaaaggaagggttgatgaaaattgcatcaacgagctccattatttgaaatcaatcg |
23140290 |
T |
 |
| Q |
393 |
tcaaagaaaccctgaggttacaccctcc |
420 |
Q |
| |
|
||||||||||| ||||||||||| |||| |
|
|
| T |
23140289 |
tcaaagaaaccttgaggttacacactcc |
23140262 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 210 - 420
Target Start/End: Complemental strand, 23149184 - 23148974
Alignment:
| Q |
210 |
ttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataatgaagaaagcaca |
309 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||| | ||||||||||||||||||||||||| |
|
|
| T |
23149184 |
ttcaggacatttttggtgctggaggcgagacatcagcaagcaccatagattgggcaatggtagagatggtaaaggatccaagaataatgaagaaagcaca |
23149085 |
T |
 |
| Q |
310 |
agctgaggtgagagaggttttcaaaatgaaaggaagggtcgaagagaattgtatcaacaaactcatttatttgaaatcagtcgtcaaagaaaccctgagg |
409 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||| || || ||||| ||||| |||||| ||||||||||| ||| |||||||||||| | ||| |
|
|
| T |
23149084 |
agatgaggtgagagaggttttcaaaatgaaaggaaaggttgatgaaaattgcatcaatgaactcaattatttgaaattagttgtcaaagaaaccttaagg |
23148985 |
T |
 |
| Q |
410 |
ttacaccctcc |
420 |
Q |
| |
|
|||||||||| |
|
|
| T |
23148984 |
ctacaccctcc |
23148974 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 200 - 414
Target Start/End: Complemental strand, 23017498 - 23017284
Alignment:
| Q |
200 |
atagctacttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataatga |
299 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
23017498 |
atagctacttttcaggacattttcggtggtggaggtgagacatcagcaagcaccacagattgggcaatgatagaaatgataaggaatccaagaataatga |
23017399 |
T |
 |
| Q |
300 |
agaaagcacaagctgaggtgagagaggttttcaaaatgaaaggaagggtcgaagagaattgtatcaacaaactcatttatttgaaatcagtcgtcaaaga |
399 |
Q |
| |
|
|||||||||||| ||| ||||| || ||| | |||||||||||| |||| || || || || || || |||||| |||| |||||||||| |||||||| |
|
|
| T |
23017398 |
agaaagcacaagatgaagtgagggatgttataaaaatgaaaggacgggttgatgaaaaatgcataaatgaactcagttatctgaaatcagttgtcaaaga |
23017299 |
T |
 |
| Q |
400 |
aaccctgaggttaca |
414 |
Q |
| |
|
|||||| || ||||| |
|
|
| T |
23017298 |
aacccttagattaca |
23017284 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 327
Target Start/End: Complemental strand, 22832249 - 22832145
Alignment:
| Q |
223 |
tggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataatgaagaaagcacaagctgaggtgaga |
322 |
Q |
| |
|
||||| |||| ||||||||||||| | |||||| ||||| |||||||| ||| | | ||||| | ||||||| |||||| |||||||||||| ||| |
|
|
| T |
22832249 |
tggtggtggaagtgagacatcagctacaaccataacatgggcgatggcagagatgattaaaaatcccaaaataatggagaaagtacaagctgaggtaaga |
22832150 |
T |
 |
| Q |
323 |
gaggt |
327 |
Q |
| |
|
||||| |
|
|
| T |
22832149 |
gaggt |
22832145 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 203 - 421
Target Start/End: Complemental strand, 21780246 - 21780028
Alignment:
| Q |
203 |
gctacttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataatgaaga |
302 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
21780246 |
gctacttttcaggacatgtttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatggtaagggatccaagaataatgaaga |
21780147 |
T |
 |
| Q |
303 |
aagcacaagctgaggtgagagaggttttcaaaatgaaaggaagggtcgaagagaattgtatcaacaaactcatttatttgaaatcagtcgtcaaagaaac |
402 |
Q |
| |
|
||||||||| ||| |||||||| ||||||||||||||||||||||| || || ||||| ||||| |||||| ||||||||||||||| ||||||||||| |
|
|
| T |
21780146 |
aagcacaagatgaagtgagagaagttttcaaaatgaaaggaagggttgatgaaaattgcatcaatgaactcaattatttgaaatcagttgtcaaagaaac |
21780047 |
T |
 |
| Q |
403 |
cctgaggttacaccctcca |
421 |
Q |
| |
|
| | ||| ||||||||||| |
|
|
| T |
21780046 |
cttaaggctacaccctcca |
21780028 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 199 - 421
Target Start/End: Original strand, 6317 - 6539
Alignment:
| Q |
199 |
gatagctacttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataatg |
298 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||| | |||||||||||| |
|
|
| T |
6317 |
gatagctactttttaggacatttttggtgctggaggtgatacatcagcaaccaccatagattgggcaatggcagaaatgataagggagccaagaataatg |
6416 |
T |
 |
| Q |
299 |
aagaaagcacaagctgaggtgagagaggttttcaaaatgaaaggaagggtcgaagagaattgtatcaacaaactcatttatttgaaatcagtcgtcaaag |
398 |
Q |
| |
|
| ||||||||||||||||||| |||| ||||| | | |||| |||| ||| || || |||| || | |||||||| ||||||||||||||||||||||| |
|
|
| T |
6417 |
atgaaagcacaagctgaggtgcgagaagtttttacattgaatggaaaggttgatgaaaattacattagcaaactcaattatttgaaatcagtcgtcaaag |
6516 |
T |
 |
| Q |
399 |
aaaccctgaggttacaccctcca |
421 |
Q |
| |
|
||||||| ||||||||||||||| |
|
|
| T |
6517 |
aaacccttaggttacaccctcca |
6539 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 222 - 421
Target Start/End: Complemental strand, 12610319 - 12610120
Alignment:
| Q |
222 |
ttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataatgaagaaagcacaagctgaggtgag |
321 |
Q |
| |
|
|||||||||||||||| |||||||| || |||| |||||||||| |||| |||||||| || |||| | |||||||||||||||| |||||| || |
|
|
| T |
12610319 |
ttggtgctggaggtgatacatcagcttctactatagtttgggcaatgtcagagttggtaagggataaaagagtgatgaagaaagcacaagatgaggtaag |
12610220 |
T |
 |
| Q |
322 |
agaggttttcaaaatgaaaggaagggtcgaagagaattgtatcaacaaactcatttatttgaaatcagtcgtcaaagaaaccctgaggttacaccctcca |
421 |
Q |
| |
|
||| | ||||| |||||||||| || ||||| |||||||| || |||||| |||||| || ||||| || ||||| ||| | |||||||| |||||| |
|
|
| T |
12610219 |
agatatattcaacatgaaaggaaatgttgaagaaaattgtataaatgaactcacttatttaaagtcagttgtgaaagagaccttaaggttacatcctcca |
12610120 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 208 - 310
Target Start/End: Complemental strand, 12637426 - 12637324
Alignment:
| Q |
208 |
ttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataatgaagaaagca |
307 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||| | | ||||||| ||||||||||||||| | |||||| |||||||| | |||||||||||| |
|
|
| T |
12637426 |
ttttcaggacatcattggtgctggaggtgaaacatcatccactaccatagtttgggcaatggcagagttagtaagggatccaagagtgatgaagaaagca |
12637327 |
T |
 |
| Q |
308 |
caa |
310 |
Q |
| |
|
||| |
|
|
| T |
12637326 |
caa |
12637324 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 205 - 421
Target Start/End: Original strand, 15885531 - 15885747
Alignment:
| Q |
205 |
tacttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataatgaagaaa |
304 |
Q |
| |
|
||||||||||||||| |||||||||||||| || ||||| | |||||||| ||||||||||||||| |||||||| || |||| | ||||||||| |
|
|
| T |
15885531 |
tacttttcaggacatgtttggtgctggaggagatacatcgagtaccaccatagtttgggcaatggcagagttggtaagggatgaaagagtgatgaagaaa |
15885630 |
T |
 |
| Q |
305 |
gcacaagctgaggtgagagaggttttcaaaatgaaaggaagggtcgaagagaattgtatcaacaaactcatttatttgaaatcagtcgtcaaagaaaccc |
404 |
Q |
| |
|
||||||| ||| || ||||| | ||||| | ||||||| || | ||||| | ||| || | |||| ||||||||| ||||| || ||||| ||| |
|
|
| T |
15885631 |
gcacaagatgaagtaagagaaatgttcaacacaaaaggaattgttggtgagaactatattaatgagctcacttatttgaagtcagttgtgaaagagacct |
15885730 |
T |
 |
| Q |
405 |
tgaggttacaccctcca |
421 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
15885731 |
taaggttacaccctcca |
15885747 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 208 - 324
Target Start/End: Complemental strand, 62581 - 62465
Alignment:
| Q |
208 |
ttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataatgaagaaagca |
307 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||| | | ||| ||||||||||||||| ||||||| |||||||| | |||||||||||| |
|
|
| T |
62581 |
ttttcaggacatgtttggtgctggaggtgatacatcagctttgagcgtagtttgggcaatggcagagttggtaagagatccaagagtgatgaagaaagca |
62482 |
T |
 |
| Q |
308 |
caagctgaggtgagaga |
324 |
Q |
| |
|
|||| ||| |||||||| |
|
|
| T |
62481 |
caagatgaagtgagaga |
62465 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 315
Target Start/End: Complemental strand, 23610595 - 23610538
Alignment:
| Q |
258 |
attgggcaatggcagaaatggtaaggaatccaagaataatgaagaaagcacaagctga |
315 |
Q |
| |
|
||||||||||||| || ||| ||| | |||||||||| ||||||||||||||||||| |
|
|
| T |
23610595 |
attgggcaatggctgagatgataaaggatccaagaattttgaagaaagcacaagctga |
23610538 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 327
Target Start/End: Original strand, 5593816 - 5593920
Alignment:
| Q |
223 |
tggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataatgaagaaagcacaagctgaggtgaga |
322 |
Q |
| |
|
||||| |||| ||||||||||||| | |||||| ||||| |||||||| ||| | | ||||| | ||||||| |||||| |||||||||||| ||| |
|
|
| T |
5593816 |
tggtggtggaagtgagacatcagctacaaccataacatgggcgatggcagagatgattaaaaatcccaaaataatggagaaagtacaagctgaggtaaga |
5593915 |
T |
 |
| Q |
323 |
gaggt |
327 |
Q |
| |
|
||||| |
|
|
| T |
5593916 |
gaggt |
5593920 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University