View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5068-Insertion-2 (Length: 968)
Name: NF5068-Insertion-2
Description: NF5068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5068-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 8 - 301
Target Start/End: Complemental strand, 562094 - 561801
Alignment:
| Q |
8 |
taatgtggttgctctaattgttgattcatttgtacatgaagcacatgaatttgctaaggaattaaacatcttatcctacgtttactttccttgttcggct |
107 |
Q |
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| T |
562094 |
taatgtggttgctctaattgttgattcatttgtacatgaagcacatgaatttgctaaggaattaaacatcttatcctacatttactttccttgttcggct |
561995 |
T |
|
| Q |
108 |
atggtattatcaatgtgcctatactcctcaaagcttgatgaaacaattacttgtgagtacaaagatcatccccaaccaatagagattccaggtgagtaaa |
207 |
Q |
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| T |
561994 |
atggtattatcaatgtgcctatactcctcaaagcttgacgaaacaattacttgtgagtacaaagatcatccccaaccaatagagattccaggtgagtaaa |
561895 |
T |
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| Q |
208 |
attaattaaccctcattggatacaactttatacttgatccgatattaattatttacatttattaaataatttacgtctagtttgcttagtaatg |
301 |
Q |
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| T |
561894 |
attaattaaccctcattggatacaactttatacttgatccgatattaattatttacatttattaaataatttacgtctagtttgcttagtaatg |
561801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-124
Query Start/End: Original strand, 345 - 770
Target Start/End: Complemental strand, 561758 - 561307
Alignment:
| Q |
345 |
gttaacaatgagaaaagaggctttttgaaatcatttttgtgatgaagataagataatatgttagttaaggatgatatacttctgcaaatgatgaaagctt |
444 |
Q |
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| T |
561758 |
gttaacaatgagaaaagaggctttttgaaatcatttttgtgatgaagataagataatatgttagttaaggatgatatacttctgcaaatgatgaaagctt |
561659 |
T |
|
| Q |
445 |
ctacaaaatgttctnnnnnnnnntataatcaagattttagtcaaatgcaatttaattttattgatcccataaaaataagtgtattctcaaaaagtacctt |
544 |
Q |
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| T |
561658 |
ctacaaaatgttctaaaaaaaa--ataatcaagattttagtcaaatgcaatttaattttattgatcccataaaaataagtgtattctcaaaaggtacctt |
561561 |
T |
|
| Q |
545 |
-caatataannnnnnngtttcatgtaaataaaaga---gtcattg--------nnnnnnnncttatagtactataatgaagatgtattttaggaacgata |
632 |
Q |
| |
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||||| || |||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||| |||| |
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| T |
561560 |
ccaatagaaattttttatttcatgtaaataaaagagtcgtcattgaaagaaaaaaaaaaaacttataggactataatgaagatgtattttaggaatgata |
561461 |
T |
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| Q |
633 |
ctatttaatagagtaaaatagttagatttgct------------------taaatttcaaggtccggggttcattgaacatactctaaagtttccttgca |
714 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
561460 |
ctatttaatagagtaaaatagttagatttgcttaaatttgaagctacttataaatttcaaggtccggggttcattgaac--actctaaagtttctttgca |
561363 |
T |
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| Q |
715 |
actctccggacgttcatcaaacacacatttctttactctctttctatgtttaactg |
770 |
Q |
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| T |
561362 |
actctccggacgttcatcaaacacacatttctatactctctttctatgtttaactg |
561307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 763 - 964
Target Start/End: Complemental strand, 561074 - 560871
Alignment:
| Q |
763 |
tttaactgtggttatttattataggttgcatgtcggttgaaggcacagatctcccagacagtcttcaaaacaggtccagtttagcatacaagttatttct |
862 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
561074 |
tttaactgtggttatttattataggttgcatgtctgttcaaggcacagatctcccagacagtcttcaaaacaggtccagtttagcatacaagttatttct |
560975 |
T |
|
| Q |
863 |
tcaccgctcccaacaacttcgtcaagctgatggtatcataatcaatagctttcttgaaatggaatc-aaagcattgaaagc-atatctcttgtctctcca |
960 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||| ||||| ||| |||||||| |
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| T |
560974 |
tcaccgctcccaacaacttcgtcaagctgatggcatcataatcaatagctttcatgaaatggaatcaaaagcattgaaagcaatatcccttatctctcca |
560875 |
T |
|
| Q |
961 |
aaaa |
964 |
Q |
| |
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|||| |
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| T |
560874 |
aaaa |
560871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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