View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5068-Insertion-5 (Length: 221)

Name: NF5068-Insertion-5
Description: NF5068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5068-Insertion-5
NF5068-Insertion-5
[»] chr7 (17 HSPs)
chr7 (83-221)||(13784050-13784188)
chr7 (8-71)||(10993685-10993748)
chr7 (8-70)||(39489006-39489068)
chr7 (8-71)||(16526562-16526625)
chr7 (23-70)||(17471288-17471335)
chr7 (23-70)||(17581879-17581926)
chr7 (28-70)||(40921241-40921283)
chr7 (28-70)||(18833681-18833723)
chr7 (42-71)||(5216336-5216365)
chr7 (42-70)||(2620812-2620840)
chr7 (42-70)||(33626392-33626420)
chr7 (42-70)||(34185751-34185779)
chr7 (42-70)||(34202129-34202157)
chr7 (42-70)||(37470965-37470993)
chr7 (42-70)||(40682974-40683002)
chr7 (42-70)||(47761168-47761196)
chr7 (42-70)||(48949033-48949061)
[»] scaffold0564 (1 HSPs)
scaffold0564 (8-71)||(9779-9842)
[»] chr8 (18 HSPs)
chr8 (8-71)||(30436013-30436076)
chr8 (8-70)||(35812982-35813044)
chr8 (8-70)||(3653974-3654036)
chr8 (23-70)||(2350514-2350561)
chr8 (8-70)||(23221730-23221792)
chr8 (28-70)||(32018941-32018983)
chr8 (28-70)||(38895291-38895333)
chr8 (8-70)||(42738508-42738570)
chr8 (21-70)||(5913931-5913980)
chr8 (134-177)||(8698213-8698256)
chr8 (43-72)||(3941068-3941097)
chr8 (42-71)||(5549453-5549482)
chr8 (42-71)||(6266913-6266942)
chr8 (42-71)||(26098898-26098927)
chr8 (42-71)||(38231195-38231224)
chr8 (42-70)||(37819837-37819865)
chr8 (42-70)||(40028379-40028407)
chr8 (42-70)||(42935221-42935249)
[»] chr5 (21 HSPs)
chr5 (8-71)||(6238679-6238742)
chr5 (8-70)||(4695472-4695534)
chr5 (8-70)||(24477762-24477824)
chr5 (8-70)||(36016636-36016698)
chr5 (8-71)||(38355683-38355746)
chr5 (8-70)||(6900389-6900451)
chr5 (23-70)||(9996637-9996684)
chr5 (8-71)||(33907497-33907560)
chr5 (92-201)||(13772855-13772964)
chr5 (28-70)||(21151193-21151235)
chr5 (92-173)||(13772258-13772337)
chr5 (27-70)||(20337728-20337771)
chr5 (28-71)||(17017073-17017116)
chr5 (28-70)||(7826390-7826432)
chr5 (28-70)||(14505342-14505384)
chr5 (28-70)||(21158334-21158376)
chr5 (37-70)||(16749559-16749592)
chr5 (42-70)||(7073459-7073487)
chr5 (30-70)||(15421595-15421635)
chr5 (42-70)||(16654530-16654558)
chr5 (42-70)||(38062417-38062445)
[»] chr3 (23 HSPs)
chr3 (8-71)||(6884245-6884308)
chr3 (8-70)||(43745832-43745894)
chr3 (8-70)||(27877910-27877972)
chr3 (12-70)||(43736657-43736715)
chr3 (28-70)||(46312257-46312299)
chr3 (28-71)||(36638699-36638742)
chr3 (28-71)||(48912742-48912785)
chr3 (28-70)||(49507963-49508005)
chr3 (30-70)||(35603283-35603323)
chr3 (27-70)||(1459732-1459775)
chr3 (28-70)||(3974182-3974224)
chr3 (76-170)||(8651289-8651382)
chr3 (28-70)||(29522253-29522295)
chr3 (28-70)||(51884763-51884805)
chr3 (42-71)||(7909604-7909633)
chr3 (42-71)||(17518072-17518101)
chr3 (41-70)||(21075582-21075611)
chr3 (42-71)||(28815577-28815606)
chr3 (42-70)||(1695592-1695620)
chr3 (42-70)||(7400322-7400350)
chr3 (42-70)||(33912280-33912308)
chr3 (30-70)||(49318919-49318959)
chr3 (42-70)||(54312812-54312840)
[»] chr4 (21 HSPs)
chr4 (8-70)||(951747-951809)
chr4 (8-71)||(43285412-43285475)
chr4 (8-71)||(20033948-20034011)
chr4 (8-70)||(52463235-52463297)
chr4 (23-71)||(45522892-45522940)
chr4 (23-70)||(47295969-47296016)
chr4 (28-70)||(32768488-32768530)
chr4 (28-70)||(41882605-41882647)
chr4 (28-71)||(32594887-32594930)
chr4 (28-70)||(16624100-16624142)
chr4 (31-70)||(27870409-27870448)
chr4 (30-71)||(31615959-31616000)
chr4 (41-70)||(54134172-54134201)
chr4 (42-71)||(56263853-56263882)
chr4 (42-70)||(2323471-2323499)
chr4 (42-70)||(4709819-4709847)
chr4 (30-70)||(19823063-19823103)
chr4 (42-70)||(21808400-21808428)
chr4 (7-67)||(50005528-50005587)
chr4 (42-70)||(51031751-51031779)
chr4 (35-71)||(52278248-52278284)
[»] chr2 (18 HSPs)
chr2 (8-70)||(21104384-21104446)
chr2 (8-64)||(17921576-17921632)
chr2 (8-70)||(15560245-15560307)
chr2 (28-70)||(10710423-10710465)
chr2 (28-71)||(15613305-15613348)
chr2 (28-70)||(30556240-30556282)
chr2 (28-70)||(23334706-23334748)
chr2 (36-70)||(28223546-28223580)
chr2 (41-71)||(29205666-29205696)
chr2 (41-70)||(5272030-5272059)
chr2 (41-70)||(26555813-26555842)
chr2 (42-71)||(34314362-34314391)
chr2 (41-70)||(40860712-40860741)
chr2 (42-70)||(13248332-13248360)
chr2 (35-71)||(19944237-19944273)
chr2 (26-70)||(20921886-20921930)
chr2 (42-70)||(31743513-31743541)
chr2 (43-71)||(40000471-40000499)
[»] chr6 (13 HSPs)
chr6 (8-70)||(11369202-11369264)
chr6 (8-70)||(12075821-12075883)
chr6 (71-177)||(20378898-20379003)
chr6 (8-70)||(26519950-26520012)
chr6 (74-144)||(14630720-14630789)
chr6 (8-70)||(15071186-15071248)
chr6 (28-72)||(12271374-12271418)
chr6 (69-177)||(19825018-19825125)
chr6 (28-71)||(31654851-31654894)
chr6 (42-70)||(10998138-10998166)
chr6 (42-70)||(22987625-22987653)
chr6 (42-70)||(23800741-23800769)
chr6 (42-70)||(26554665-26554693)
[»] chr1 (19 HSPs)
chr1 (8-70)||(33189405-33189467)
chr1 (23-70)||(9660488-9660535)
chr1 (8-70)||(32058220-32058282)
chr1 (28-72)||(700562-700606)
chr1 (30-70)||(23973640-23973680)
chr1 (8-71)||(45566631-45566694)
chr1 (30-70)||(21720446-21720486)
chr1 (27-71)||(33814376-33814420)
chr1 (27-71)||(33873846-33873890)
chr1 (35-70)||(50511431-50511466)
chr1 (41-71)||(12749987-12750017)
chr1 (28-70)||(40411981-40412023)
chr1 (41-71)||(45756919-45756949)
chr1 (42-71)||(6714023-6714052)
chr1 (41-70)||(46158470-46158499)
chr1 (42-70)||(5115546-5115574)
chr1 (43-71)||(43780844-43780872)
chr1 (42-70)||(44372348-44372376)
chr1 (35-71)||(44922831-44922867)
[»] scaffold0041 (1 HSPs)
scaffold0041 (28-70)||(51812-51854)
[»] scaffold0486 (1 HSPs)
scaffold0486 (42-70)||(205-233)
[»] scaffold0173 (1 HSPs)
scaffold0173 (42-70)||(26137-26165)


Alignment Details
Target: chr7 (Bit Score: 115; Significance: 1e-58; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 83 - 221
Target Start/End: Original strand, 13784050 - 13784188
Alignment:
Q  83 aaatgggaggagtagttaaaataagaggatgagaggggtgcataatgaccattagattaaatcaatgggtaggattaaattcagttttaaagtgttatgt 182  Q
    ||||| |||||||||||||||| ||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
T  13784050 aaatgagaggagtagttaaaatgagaggatgagaggagtacataatgaccattagattaaatctatgggtaggattaaattcagttttaaagtgttacgt 13784149  T
Q  183 cccttctgatctttctctcagcgcttcttcagtttgtgc 221  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13784150 cccttctgatctttctctcagcgcttcttcagtttgtgc 13784188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 10993685 - 10993748
Alignment:
Q  8 aaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagctctaa 71  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10993685 aaaagcccttggcccggccgggccgggcctaaacgggccgggccgcccgttttgacagctctaa 10993748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 39489068 - 39489006
Alignment:
Q  8 aaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  39489068 aaaagcccttggcccggccgggccgggcctaaacgggccgggccgcccgttttgacagctcta 39489006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 16526562 - 16526625
Alignment:
Q  8 aaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagctctaa 71  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||    
T  16526562 aaaagcccttggcccggccgggccgggcctaaacgggccgggccgcccattttgacagctctaa 16526625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 17471335 - 17471288
Alignment:
Q  23 ggccaggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||| ||||||||||||| |||| ||||||||||||||||||||||||    
T  17471335 ggcccggccgggcctaaaagggcagggccgcccgttttgacagctcta 17471288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 17581879 - 17581926
Alignment:
Q  23 ggccaggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||| ||||||||||||| |||| ||||||||||||||||||||||||    
T  17581879 ggcccggccgggcctaaaagggcagggccgcccgttttgacagctcta 17581926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 40921283 - 40921241
Alignment:
Q  28 ggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||| |||||||||| |||||||||||||||||||||||||    
T  40921283 ggccggccctaaacgggtcgggccgcccgttttgacagctcta 40921241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 18833723 - 18833681
Alignment:
Q  28 ggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||| |||| ||||||| |||||||||||||||||||||||    
T  18833723 ggccggccctacacgggccaggccgcccgttttgacagctcta 18833681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 71
Target Start/End: Original strand, 5216336 - 5216365
Alignment:
Q  42 gggccgggccgcccgttttgacagctctaa 71  Q
    ||||||||||||||||||||||||||||||    
T  5216336 gggccgggccgcccgttttgacagctctaa 5216365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 2620840 - 2620812
Alignment:
Q  42 gggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||||||||||||||    
T  2620840 gggccgggccgcccgttttgacagctcta 2620812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 33626420 - 33626392
Alignment:
Q  42 gggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||||||||||||||    
T  33626420 gggccgggccgcccgttttgacagctcta 33626392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 34185779 - 34185751
Alignment:
Q  42 gggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||||||||||||||    
T  34185779 gggccgggccgcccgttttgacagctcta 34185751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 34202157 - 34202129
Alignment:
Q  42 gggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||||||||||||||    
T  34202157 gggccgggccgcccgttttgacagctcta 34202129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 37470993 - 37470965
Alignment:
Q  42 gggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||||||||||||||    
T  37470993 gggccgggccgcccgttttgacagctcta 37470965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 40683002 - 40682974
Alignment:
Q  42 gggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||||||||||||||    
T  40683002 gggccgggccgcccgttttgacagctcta 40682974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 47761196 - 47761168
Alignment:
Q  42 gggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||||||||||||||    
T  47761196 gggccgggccgcccgttttgacagctcta 47761168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 48949061 - 48949033
Alignment:
Q  42 gggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||||||||||||||    
T  48949061 gggccgggccgcccgttttgacagctcta 48949033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 9842 - 9779
Alignment:
Q  8 aaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagctctaa 71  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9842 aaaagcccttggcccggccgggccgggcctaaacgggccgggccgcccgttttgacagctctaa 9779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 30436076 - 30436013
Alignment:
Q  8 aaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagctctaa 71  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30436076 aaaagcccttggcccggccgggccgggcctaaacgggccgggccgcccgttttgacagctctaa 30436013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 35813044 - 35812982
Alignment:
Q  8 aaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  35813044 aaaagcccttggcccggccgggccgggcctaaacgggccgggccgcccgttttgacagctcta 35812982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 3654036 - 3653974
Alignment:
Q  8 aaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||| ||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||    
T  3654036 aaaatcccttggcccggccgggccaggcctaaacgggccgggccgcccgttttgacagctcta 3653974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 2350514 - 2350561
Alignment:
Q  23 ggccaggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  2350514 ggccgggccgggcctaaacgggccgggccgcccgttttgacagctcta 2350561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 23221792 - 23221730
Alignment:
Q  8 aaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    ||||||||||||||  ||| ||||||||||||||||||||||| |||||| ||||||||||||    
T  23221792 aaaagcccttggccccgccgggccgggcctaaacgggccgggctgcccgtattgacagctcta 23221730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 32018941 - 32018983
Alignment:
Q  28 ggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  32018941 ggccggccctaaacgggccgggccgcccgttttgacagctcta 32018983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 38895291 - 38895333
Alignment:
Q  28 ggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  38895291 ggccggccctaaacgggccgggccgcccgttttgacagctcta 38895333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 42738570 - 42738508
Alignment:
Q  8 aaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||| | || |  |||||||||||||||| |||||||||||||||||||||||    
T  42738570 aaaagcccttggcccgaccggatcgggcctaaacgggccaggccgcccgttttgacagctcta 42738508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 5913931 - 5913980
Alignment:
Q  21 cgggccaggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||| |||||  ||||||||||||||||||||||||||||||||||||    
T  5913931 cgggccgggccgaccctaaacgggccgggccgcccgttttgacagctcta 5913980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 177
Target Start/End: Complemental strand, 8698256 - 8698213
Alignment:
Q  134 ttagattaaatcaatgggtaggattaaattcagttttaaagtgt 177  Q
    ||||||||||| ||||| |||||||||||||| |||||||||||    
T  8698256 ttagattaaattaatggataggattaaattcaattttaaagtgt 8698213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 72
Target Start/End: Original strand, 3941068 - 3941097
Alignment:
Q  43 ggccgggccgcccgttttgacagctctaag 72  Q
    ||||||||||||||||||||||||||||||    
T  3941068 ggccgggccgcccgttttgacagctctaag 3941097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 71
Target Start/End: Original strand, 5549453 - 5549482
Alignment:
Q  42 gggccgggccgcccgttttgacagctctaa 71  Q
    ||||||||||||||||||||||||||||||    
T  5549453 gggccgggccgcccgttttgacagctctaa 5549482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 71
Target Start/End: Original strand, 6266913 - 6266942
Alignment:
Q  42 gggccgggccgcccgttttgacagctctaa 71  Q
    ||||||||||||||||||||||||||||||    
T  6266913 gggccgggccgcccgttttgacagctctaa 6266942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 71
Target Start/End: Original strand, 26098898 - 26098927
Alignment:
Q  42 gggccgggccgcccgttttgacagctctaa 71  Q
    ||||||||||||||||||||||||||||||    
T  26098898 gggccgggccgcccgttttgacagctctaa 26098927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 71
Target Start/End: Complemental strand, 38231224 - 38231195
Alignment:
Q  42 gggccgggccgcccgttttgacagctctaa 71  Q
    ||||||||||||||||||||||||||||||    
T  38231224 gggccgggccgcccgttttgacagctctaa 38231195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Original strand, 37819837 - 37819865
Alignment:
Q  42 gggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||||||||||||||    
T  37819837 gggccgggccgcccgttttgacagctcta 37819865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Original strand, 40028379 - 40028407
Alignment:
Q  42 gggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||||||||||||||    
T  40028379 gggccgggccgcccgttttgacagctcta 40028407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 42935249 - 42935221
Alignment:
Q  42 gggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||||||||||||||    
T  42935249 gggccgggccgcccgttttgacagctcta 42935221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 6238679 - 6238742
Alignment:
Q  8 aaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagctctaa 71  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6238679 aaaagcccttggcccggccgggccgggcctaaacgggccgggccgcccgttttgacagctctaa 6238742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 4695534 - 4695472
Alignment:
Q  8 aaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  4695534 aaaagcccttggcccggccgggccgggcctaaacgggccgggccgcccgttttgacagctcta 4695472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 24477762 - 24477824
Alignment:
Q  8 aaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  24477762 aaaagcccttggcccggccgggccgggcctaaacgggccgggccgcccgttttgacagctcta 24477824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 36016636 - 36016698
Alignment:
Q  8 aaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  36016636 aaaagcccttggcccggccgggccgggcctaaacgggccgggccgcccgttttgacagctcta 36016698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 38355746 - 38355683
Alignment:
Q  8 aaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagctctaa 71  Q
    |||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  38355746 aaaagcccttggcccggccgggccgggcctaaacgggtcgggccgcccgttttgacagctctaa 38355683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 6900389 - 6900451
Alignment:
Q  8 aaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||    
T  6900389 aaaagcccttggcccggccgggccgagcctaaacgggccgggccgcccgttttgacagctcta 6900451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 9996637 - 9996684
Alignment:
Q  23 ggccaggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  9996637 ggcccggccgggcctaaacgggccgggccgcccgttttgacagctcta 9996684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 33907560 - 33907497
Alignment:
Q  8 aaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagctctaa 71  Q
    ||||||||||| || |||| | ||||||||||||||| ||||||||||||||||||||||||||    
T  33907560 aaaagcccttgacccggccggaccgggcctaaacgggtcgggccgcccgttttgacagctctaa 33907497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 201
Target Start/End: Complemental strand, 13772964 - 13772855
Alignment:
Q  92 gagtagttaaaataagaggatgagaggggtgcataatgaccattagattaaatcaatgggtaggattaaattcagttttaaagtgttatg-tcccttctg 190  Q
    |||||| ||||||||||| |||||||| || ||||||  |||| |||| |||| ||||| ||||||||||||||||||||||||||  ||  ||||||||    
T  13772964 gagtagctaaaataagag-atgagaggagtacataatagccataagatcaaattaatggttaggattaaattcagttttaaagtgtgctgcccccttctg 13772866  T
Q  191 atctttctctc 201  Q
    |||| ||||||    
T  13772865 atctctctctc 13772855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 21151235 - 21151193
Alignment:
Q  28 ggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  21151235 ggccggccctaaacgggccgggccgcccgttttgacagctcta 21151193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 173
Target Start/End: Original strand, 13772258 - 13772337
Alignment:
Q  92 gagtagttaaaataagaggatgagaggggtgcataatgaccattagattaaatcaatgggtaggattaaattcagttttaaa 173  Q
    ||||||||||||| |||| ||||||||||| ||||||  ||||||||| |||| ||| |||||||| |||||||||||||||    
T  13772258 gagtagttaaaatgagag-atgagaggggtacataatagccattagatcaaattaat-ggtaggatcaaattcagttttaaa 13772337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 20337771 - 20337728
Alignment:
Q  27 aggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||| |||||||||| ||||||||||||||    
T  20337771 aggccgggcctaaacgggtcgggccgcccattttgacagctcta 20337728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 17017073 - 17017116
Alignment:
Q  28 ggccgggcctaaacgggccgggccgcccgttttgacagctctaa 71  Q
    |||||| |||||||||| ||||||| ||||||||||||||||||    
T  17017073 ggccggacctaaacgggtcgggccgtccgttttgacagctctaa 17017116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 7826432 - 7826390
Alignment:
Q  28 ggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||| |||||||| || ||||||||||||||||||||||||    
T  7826432 ggccggccctaaacgtgcagggccgcccgttttgacagctcta 7826390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 14505384 - 14505342
Alignment:
Q  28 ggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||| ||||||| |||||| |||||||||||||||||||||    
T  14505384 ggccggccctaaacaggccggaccgcccgttttgacagctcta 14505342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 21158376 - 21158334
Alignment:
Q  28 ggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||| |||||||||| ||||| |||||||||||||||||||    
T  21158376 ggccggccctaaacgggtcgggctgcccgttttgacagctcta 21158334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 16749559 - 16749592
Alignment:
Q  37 taaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||||||| |||||||||||||||||||||||    
T  16749559 taaacgggccaggccgcccgttttgacagctcta 16749592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 7073487 - 7073459
Alignment:
Q  42 gggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||||||||||||||    
T  7073487 gggccgggccgcccgttttgacagctcta 7073459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 15421595 - 15421635
Alignment:
Q  30 ccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||| ||||||||||||||| |||||||||||| |||||||    
T  15421595 ccggccctaaacgggccgggacgcccgttttgatagctcta 15421635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Original strand, 16654530 - 16654558
Alignment:
Q  42 gggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||||||||||||||    
T  16654530 gggccgggccgcccgttttgacagctcta 16654558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 38062445 - 38062417
Alignment:
Q  42 gggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||||||||||||||    
T  38062445 gggccgggccgcccgttttgacagctcta 38062417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 6884308 - 6884245
Alignment:
Q  8 aaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagctctaa 71  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6884308 aaaagcccttggcccggccgggccgggcctaaacgggccgggccgcccgttttgacagctctaa 6884245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 43745894 - 43745832
Alignment:
Q  8 aaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  43745894 aaaagcccttggcccggccgggccgggcctaaacgggccgggccgcccgttttgacagctcta 43745832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 27877910 - 27877972
Alignment:
Q  8 aaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||    
T  27877910 aaaagcccttggcccggccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 27877972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 43736657 - 43736715
Alignment:
Q  12 gcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||    
T  43736657 gcccttggcccggccgggccgggcttaaacgggccgggccgcccgttttgacagctcta 43736715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 46312257 - 46312299
Alignment:
Q  28 ggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  46312257 ggccgggcctaaacgggccgggccgcccgttttgacagctcta 46312299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 36638699 - 36638742
Alignment:
Q  28 ggccgggcctaaacgggccgggccgcccgttttgacagctctaa 71  Q
    |||||| |||||||||||||| ||||||||||||||||||||||    
T  36638699 ggccggccctaaacgggccggaccgcccgttttgacagctctaa 36638742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 48912785 - 48912742
Alignment:
Q  28 ggccgggcctaaacgggccgggccgcccgttttgacagctctaa 71  Q
    |||||| |||||||||||||||||||||||||||| ||||||||    
T  48912785 ggccggccctaaacgggccgggccgcccgttttgatagctctaa 48912742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 49507963 - 49508005
Alignment:
Q  28 ggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||| |||| |||||||||||||||||||||||||||||||    
T  49507963 ggccggccctagacgggccgggccgcccgttttgacagctcta 49508005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 35603323 - 35603283
Alignment:
Q  30 ccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||| ||||||||||| ||||||||||||||||||||||||    
T  35603323 ccggtcctaaacgggctgggccgcccgttttgacagctcta 35603283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 1459775 - 1459732
Alignment:
Q  27 aggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    ||||||| |||||||||| ||||||||||||||| |||||||||    
T  1459775 aggccggccctaaacgggtcgggccgcccgttttaacagctcta 1459732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 3974224 - 3974182
Alignment:
Q  28 ggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||| |||||| ||||||||||||||||||||| |||||||    
T  3974224 ggccggtcctaaatgggccgggccgcccgttttgatagctcta 3974182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 170
Target Start/End: Original strand, 8651289 - 8651382
Alignment:
Q  76 atgtttcaaatgggaggagtagttaaaataagaggatgagaggggtgcataatgaccattagattaaatcaatgggtaggattaaattcagtttt 170  Q
    |||||||||||| |||||||  ||||||| |||| ||||||||| |   ||||| ||||||||| |||| ||||| | |||||||||||| ||||    
T  8651289 atgtttcaaatgagaggagtttttaaaatgagag-atgagagggataattaatgtccattagatcaaattaatggtttggattaaattcactttt 8651382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 29522295 - 29522253
Alignment:
Q  28 ggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||| |||||||||| |||||||||| ||||||||||||||    
T  29522295 ggccggccctaaacgggtcgggccgcccattttgacagctcta 29522253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 51884805 - 51884763
Alignment:
Q  28 ggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||| |||||||||  |||||||||||||||||||||||||    
T  51884805 ggccggccctaaacggatcgggccgcccgttttgacagctcta 51884763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 71
Target Start/End: Complemental strand, 7909633 - 7909604
Alignment:
Q  42 gggccgggccgcccgttttgacagctctaa 71  Q
    ||||||||||||||||||||||||||||||    
T  7909633 gggccgggccgcccgttttgacagctctaa 7909604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 71
Target Start/End: Complemental strand, 17518101 - 17518072
Alignment:
Q  42 gggccgggccgcccgttttgacagctctaa 71  Q
    ||||||||||||||||||||||||||||||    
T  17518101 gggccgggccgcccgttttgacagctctaa 17518072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 70
Target Start/End: Complemental strand, 21075611 - 21075582
Alignment:
Q  41 cgggccgggccgcccgttttgacagctcta 70  Q
    ||||||||||||||||||||||||||||||    
T  21075611 cgggccgggccgcccgttttgacagctcta 21075582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 71
Target Start/End: Complemental strand, 28815606 - 28815577
Alignment:
Q  42 gggccgggccgcccgttttgacagctctaa 71  Q
    ||||||||||||||||||||||||||||||    
T  28815606 gggccgggccgcccgttttgacagctctaa 28815577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Original strand, 1695592 - 1695620
Alignment:
Q  42 gggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||||||||||||||    
T  1695592 gggccgggccgcccgttttgacagctcta 1695620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Original strand, 7400322 - 7400350
Alignment:
Q  42 gggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||||||||||||||    
T  7400322 gggccgggccgcccgttttgacagctcta 7400350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Original strand, 33912280 - 33912308
Alignment:
Q  42 gggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||||||||||||||    
T  33912280 gggccgggccgcccgttttgacagctcta 33912308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 49318919 - 49318959
Alignment:
Q  30 ccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    ||||||||||| |||| |||| |||||||||||||||||||    
T  49318919 ccgggcctaaatgggctgggctgcccgttttgacagctcta 49318959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 54312840 - 54312812
Alignment:
Q  42 gggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||||||||||||||    
T  54312840 gggccgggccgcccgttttgacagctcta 54312812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 951747 - 951809
Alignment:
Q  8 aaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  951747 aaaagcccttggcccggccgggccgggcctaaacgggccgggccgcccgttttgacagctcta 951809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 43285475 - 43285412
Alignment:
Q  8 aaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagctctaa 71  Q
    |||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||    
T  43285475 aaaagcccttggcccgtccgggccgggcctaaacgggccgggccgcccgttttgacagctctaa 43285412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 20034011 - 20033948
Alignment:
Q  8 aaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagctctaa 71  Q
    ||||||||||| || |||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  20034011 aaaagcccttgacccggcccggccggggctaaacgggccgggccgcccgttttgacagctctaa 20033948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 52463297 - 52463235
Alignment:
Q  8 aaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||| |  | |||||||||||||||||||||||||||||||||||||||||||    
T  52463297 aaaagcccttggcccgatcgggccgggcctaaacgggccgggccgcccgttttgacagctcta 52463235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 45522892 - 45522940
Alignment:
Q  23 ggccaggccgggcctaaacgggccgggccgcccgttttgacagctctaa 71  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  45522892 ggcccggccgggcctaaacggggcgggccgcccgttttgacagctctaa 45522940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 47295969 - 47296016
Alignment:
Q  23 ggccaggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||    
T  47295969 ggcccggccgggcctaaacgggtcgggccgcccgttttgacagctcta 47296016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 32768488 - 32768530
Alignment:
Q  28 ggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  32768488 ggccgggcctaaacgggccggaccgcccgttttgacagctcta 32768530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 41882647 - 41882605
Alignment:
Q  28 ggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  41882647 ggccggccctaaacgggccgggccgcccgttttgacagctcta 41882605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 32594887 - 32594930
Alignment:
Q  28 ggccgggcctaaacgggccgggccgcccgttttgacagctctaa 71  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||    
T  32594887 ggccgagcctaaacgggccgggccgtccgttttgacagctctaa 32594930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 16624100 - 16624142
Alignment:
Q  28 ggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||| || |||||||||||||||||||||||||||||||||    
T  16624100 ggccggccccaaacgggccgggccgcccgttttgacagctcta 16624142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 70
Target Start/End: Original strand, 27870409 - 27870448
Alignment:
Q  31 cgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||| |||||||||| ||||||||||||||    
T  27870409 cgggcctaaacgggtcgggccgcccattttgacagctcta 27870448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 31616000 - 31615959
Alignment:
Q  30 ccgggcctaaacgggccgggccgcccgttttgacagctctaa 71  Q
    |||| |||||||||| ||| ||||||||||||||||||||||    
T  31616000 ccggtcctaaacgggtcggtccgcccgttttgacagctctaa 31615959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 70
Target Start/End: Complemental strand, 54134201 - 54134172
Alignment:
Q  41 cgggccgggccgcccgttttgacagctcta 70  Q
    ||||||||||||||||||||||||||||||    
T  54134201 cgggccgggccgcccgttttgacagctcta 54134172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 71
Target Start/End: Complemental strand, 56263882 - 56263853
Alignment:
Q  42 gggccgggccgcccgttttgacagctctaa 71  Q
    ||||||||||||||||||||||||||||||    
T  56263882 gggccgggccgcccgttttgacagctctaa 56263853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 2323499 - 2323471
Alignment:
Q  42 gggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||||||||||||||    
T  2323499 gggccgggccgcccgttttgacagctcta 2323471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Original strand, 4709819 - 4709847
Alignment:
Q  42 gggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||||||||||||||    
T  4709819 gggccgggccgcccgttttgacagctcta 4709847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 19823103 - 19823063
Alignment:
Q  30 ccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||| |||||||||| ||| |||||||||||||||||||||    
T  19823103 ccggccctaaacgggtcggaccgcccgttttgacagctcta 19823063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Original strand, 21808400 - 21808428
Alignment:
Q  42 gggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||||||||||||||    
T  21808400 gggccgggccgcccgttttgacagctcta 21808428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 50005528 - 50005587
Alignment:
Q  7 aaaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagct 67  Q
    ||||||||||||| | || ||||||||||||||||||| |||| ||  |||||||||||||    
T  50005528 aaaaagcccttgggctggtcaggccgggcctaaacgggtcgggtcg-tcgttttgacagct 50005587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Original strand, 51031751 - 51031779
Alignment:
Q  42 gggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||||||||||||||    
T  51031751 gggccgggccgcccgttttgacagctcta 51031779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 52278284 - 52278248
Alignment:
Q  35 cctaaacgggccgggccgcccgttttgacagctctaa 71  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  52278284 cctaaatgggtcgggccgcccgttttgacagctctaa 52278248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 21104384 - 21104446
Alignment:
Q  8 aaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  21104384 aaaagcccttggcccggccgggccgggcctaaacgggccgggccgcccgttttgacagctcta 21104446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 17921576 - 17921632
Alignment:
Q  8 aaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgaca 64  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  17921576 aaaagcccttggctcggccaggccgggcctaaacgggccgggccgcccgttttgaca 17921632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 15560307 - 15560245
Alignment:
Q  8 aaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||| ||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||    
T  15560307 aaaatcccttggcccggccgggccggacctaaacgggccgggccgcccgttttgacagctcta 15560245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 10710423 - 10710465
Alignment:
Q  28 ggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  10710423 ggccggccctaaacgggccgggccgcccgttttgacagctcta 10710465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 15613348 - 15613305
Alignment:
Q  28 ggccgggcctaaacgggccgggccgcccgttttgacagctctaa 71  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||    
T  15613348 ggccgagcctaaacgggtcgggccgcccgttttgacagctctaa 15613305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 30556240 - 30556282
Alignment:
Q  28 ggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||| |||||||||||||||||||||||||||||| |||||    
T  30556240 ggccggccctaaacgggccgggccgcccgttttgacaactcta 30556282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 23334706 - 23334748
Alignment:
Q  28 ggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||| ||||||||||||||||| ||| ||||||||||||||    
T  23334706 ggccggccctaaacgggccgggccaccccttttgacagctcta 23334748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 28223546 - 28223580
Alignment:
Q  36 ctaaacgggccgggccgcccgttttgacagctcta 70  Q
    ||||||||||||| |||||||||||||||||||||    
T  28223546 ctaaacgggccggaccgcccgttttgacagctcta 28223580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 71
Target Start/End: Complemental strand, 29205696 - 29205666
Alignment:
Q  41 cgggccgggccgcccgttttgacagctctaa 71  Q
    |||||||||||||||||||||||||||||||    
T  29205696 cgggccgggccgcccgttttgacagctctaa 29205666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 70
Target Start/End: Original strand, 5272030 - 5272059
Alignment:
Q  41 cgggccgggccgcccgttttgacagctcta 70  Q
    ||||||||||||||||||||||||||||||    
T  5272030 cgggccgggccgcccgttttgacagctcta 5272059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 70
Target Start/End: Complemental strand, 26555842 - 26555813
Alignment:
Q  41 cgggccgggccgcccgttttgacagctcta 70  Q
    ||||||||||||||||||||||||||||||    
T  26555842 cgggccgggccgcccgttttgacagctcta 26555813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 71
Target Start/End: Original strand, 34314362 - 34314391
Alignment:
Q  42 gggccgggccgcccgttttgacagctctaa 71  Q
    ||||||||||||||||||||||||||||||    
T  34314362 gggccgggccgcccgttttgacagctctaa 34314391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 70
Target Start/End: Complemental strand, 40860741 - 40860712
Alignment:
Q  41 cgggccgggccgcccgttttgacagctcta 70  Q
    ||||||||||||||||||||||||||||||    
T  40860741 cgggccgggccgcccgttttgacagctcta 40860712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Original strand, 13248332 - 13248360
Alignment:
Q  42 gggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||||||||||||||    
T  13248332 gggccgggccgcccgttttgacagctcta 13248360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 19944273 - 19944237
Alignment:
Q  35 cctaaacgggccgggccgcccgttttgacagctctaa 71  Q
    ||||||| || ||||||||||||||||||||||||||    
T  19944273 cctaaacaggtcgggccgcccgttttgacagctctaa 19944237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 20921930 - 20921886
Alignment:
Q  26 caggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||| || | | |||||||||||||||||||||||    
T  20921930 caggccgggcctaagcgagtctggccgcccgttttgacagctcta 20921886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Original strand, 31743513 - 31743541
Alignment:
Q  42 gggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||||||||||||||    
T  31743513 gggccgggccgcccgttttgacagctcta 31743541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 71
Target Start/End: Complemental strand, 40000499 - 40000471
Alignment:
Q  43 ggccgggccgcccgttttgacagctctaa 71  Q
    |||||||||||||||||||||||||||||    
T  40000499 ggccgggccgcccgttttgacagctctaa 40000471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 11369264 - 11369202
Alignment:
Q  8 aaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||    
T  11369264 aaaagcccttggcccggccgggccaggcctaaacgggccgggccgcccgttttgacagctcta 11369202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 12075883 - 12075821
Alignment:
Q  8 aaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||    
T  12075883 aaaagcccttggcctggcccggccgggcctaaacggaccgggccgcccgttttgacagctcta 12075821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 71 - 177
Target Start/End: Complemental strand, 20379003 - 20378898
Alignment:
Q  71 aggggatgtttcaaatgggaggagtagttaaaataagaggatgagaggggtgcataatgaccattagattaaatcaatgggtaggattaaattcagtttt 170  Q
    ||||||||| |||| || || || |||||||||| |||| |||||||| || |||||||||||||||||||||| ||||| || |||| |||| ||||||    
T  20379003 aggggatgtatcaagtgagaagaatagttaaaatgagag-atgagaggagtacataatgaccattagattaaattaatggttatgatttaatttagtttt 20378905  T
Q  171 aaagtgt 177  Q
    |||||||    
T  20378904 aaagtgt 20378898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 26519950 - 26520012
Alignment:
Q  8 aaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||| |||| ||||||||||||||||||| |||| ||||||||||||||||||    
T  26519950 aaaagcccttggcccggccgggccgggcctaaacgggccaggccacccgttttgacagctcta 26520012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 14630720 - 14630789
Alignment:
Q  74 ggatgtttcaaatgggaggagtagttaaaataagaggatgagaggggtgcataatgaccattagattaaat 144  Q
    |||||| ||||||| |||||||||||||||||||| ||||| ||| || ||||||||||||||||||||||    
T  14630720 ggatgtatcaaatgagaggagtagttaaaataaga-gatgaaaggagtacataatgaccattagattaaat 14630789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 15071186 - 15071248
Alignment:
Q  8 aaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||| || | ||||| |||||||||| ||||||||||||||||||||||||||    
T  15071186 aaaagcccttggcccggtccggccgagcctaaacggaccgggccgcccgttttgacagctcta 15071248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 12271418 - 12271374
Alignment:
Q  28 ggccgggcctaaacgggccgggccgcccgttttgacagctctaag 72  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||    
T  12271418 ggccgggcctaaatgggccgggccgcccattttgacagctctaag 12271374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 177
Target Start/End: Complemental strand, 19825125 - 19825018
Alignment:
Q  69 taaggggatgtttcaaatgggaggagtagttaaaataagaggatgagaggggtgcataatgaccattagattaaatcaatgggtaggattaaattcagtt 168  Q
    ||||||||| | |||| || ||||| |||||||||| |||| |||||||| ||  ||||||  ||||||||||||| ||||| || |||| |||| ||||    
T  19825125 taaggggatatatcaagtgagaggaatagttaaaatgagag-atgagaggagtagataatggtcattagattaaattaatggttatgatttaatttagtt 19825027  T
Q  169 ttaaagtgt 177  Q
    |||||||||    
T  19825026 ttaaagtgt 19825018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 31654894 - 31654851
Alignment:
Q  28 ggccgggcctaaacgggccgggccgcccgttttgacagctctaa 71  Q
    ||||||||| ||||||||||||  ||||||||||||||||||||    
T  31654894 ggccgggccgaaacgggccgggtagcccgttttgacagctctaa 31654851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Original strand, 10998138 - 10998166
Alignment:
Q  42 gggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||||||||||||||    
T  10998138 gggccgggccgcccgttttgacagctcta 10998166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 22987653 - 22987625
Alignment:
Q  42 gggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||||||||||||||    
T  22987653 gggccgggccgcccgttttgacagctcta 22987625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Original strand, 23800741 - 23800769
Alignment:
Q  42 gggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||||||||||||||    
T  23800741 gggccgggccgcccgttttgacagctcta 23800769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 26554693 - 26554665
Alignment:
Q  42 gggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||||||||||||||    
T  26554693 gggccgggccgcccgttttgacagctcta 26554665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 33189405 - 33189467
Alignment:
Q  8 aaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||    
T  33189405 aaaagcccttggcccggccgggccgggcctaaacgggctgggccgcccgttttgacagctcta 33189467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 9660535 - 9660488
Alignment:
Q  23 ggccaggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  9660535 ggcccggccgggcctaaacgggccgggccgcccgttttgacagctcta 9660488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 32058220 - 32058282
Alignment:
Q  8 aaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    ||||||||||| || || | |||||||| ||||||||||||| ||||||||||||||||||||    
T  32058220 aaaagcccttgacccggtcgggccgggcttaaacgggccggggcgcccgttttgacagctcta 32058282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 700562 - 700606
Alignment:
Q  28 ggccgggcctaaacgggccgggccgcccgttttgacagctctaag 72  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||    
T  700562 ggccggccctaaacgggccgggtcgcccgttttgacagctctaag 700606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 23973680 - 23973640
Alignment:
Q  30 ccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  23973680 ccggccctaaacgggccgggccgcccgttttgacagctcta 23973640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 45566631 - 45566694
Alignment:
Q  8 aaaagcccttggccgggccaggccgggcctaaacgggccgggccgcccgttttgacagctctaa 71  Q
    ||||||| |||||| |||| |||| |||||||||||||||| ||| ||||||| ||||||||||    
T  45566631 aaaagccattggcccggcccggccaggcctaaacgggccggaccgtccgtttttacagctctaa 45566694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 21720446 - 21720486
Alignment:
Q  30 ccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||| |||||||||||||| |||||||||||||||||||||    
T  21720446 ccggccctaaacgggccggtccgcccgttttgacagctcta 21720486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 33814420 - 33814376
Alignment:
Q  27 aggccgggcctaaacgggccgggccgcccgttttgacagctctaa 71  Q
    ||||||| ||||||||| |||||||| ||||||||||||||||||    
T  33814420 aggccggccctaaacggaccgggccgtccgttttgacagctctaa 33814376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 33873890 - 33873846
Alignment:
Q  27 aggccgggcctaaacgggccgggccgcccgttttgacagctctaa 71  Q
    ||||||| ||||||||| |||||||| ||||||||||||||||||    
T  33873890 aggccggccctaaacggaccgggccgtccgttttgacagctctaa 33873846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 50511466 - 50511431
Alignment:
Q  35 cctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||| |||||||||||||||||||||    
T  50511466 cctaaacgggccggaccgcccgttttgacagctcta 50511431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 71
Target Start/End: Original strand, 12749987 - 12750017
Alignment:
Q  41 cgggccgggccgcccgttttgacagctctaa 71  Q
    |||||||||||||||||||||||||||||||    
T  12749987 cgggccgggccgcccgttttgacagctctaa 12750017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 40412023 - 40411981
Alignment:
Q  28 ggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||| | |||||||||||| |||||||||||||||||||||    
T  40412023 ggccggccataaacgggccggaccgcccgttttgacagctcta 40411981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 71
Target Start/End: Complemental strand, 45756949 - 45756919
Alignment:
Q  41 cgggccgggccgcccgttttgacagctctaa 71  Q
    |||||||||||||||||||||||||||||||    
T  45756949 cgggccgggccgcccgttttgacagctctaa 45756919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 71
Target Start/End: Complemental strand, 6714052 - 6714023
Alignment:
Q  42 gggccgggccgcccgttttgacagctctaa 71  Q
    ||||||||||||||||||||||||||||||    
T  6714052 gggccgggccgcccgttttgacagctctaa 6714023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 70
Target Start/End: Original strand, 46158470 - 46158499
Alignment:
Q  41 cgggccgggccgcccgttttgacagctcta 70  Q
    ||||||||||||||||||||||||||||||    
T  46158470 cgggccgggccgcccgttttgacagctcta 46158499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Original strand, 5115546 - 5115574
Alignment:
Q  42 gggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||||||||||||||    
T  5115546 gggccgggccgcccgttttgacagctcta 5115574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 71
Target Start/End: Complemental strand, 43780872 - 43780844
Alignment:
Q  43 ggccgggccgcccgttttgacagctctaa 71  Q
    |||||||||||||||||||||||||||||    
T  43780872 ggccgggccgcccgttttgacagctctaa 43780844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 44372376 - 44372348
Alignment:
Q  42 gggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||||||||||||||    
T  44372376 gggccgggccgcccgttttgacagctcta 44372348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 44922831 - 44922867
Alignment:
Q  35 cctaaacgggccgggccgcccgttttgacagctctaa 71  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  44922831 cctaaatgggccggaccgcccgttttgacagctctaa 44922867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 51812 - 51854
Alignment:
Q  28 ggccgggcctaaacgggccgggccgcccgttttgacagctcta 70  Q
    |||||| |||||||||| |||||||||||||||||||||||||    
T  51812 ggccggccctaaacgggtcgggccgcccgttttgacagctcta 51854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0486 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0486
Description:

Target: scaffold0486; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Original strand, 205 - 233
Alignment:
Q  42 gggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||||||||||||||    
T  205 gggccgggccgcccgttttgacagctcta 233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 26165 - 26137
Alignment:
Q  42 gggccgggccgcccgttttgacagctcta 70  Q
    |||||||||||||||||||||||||||||    
T  26165 gggccgggccgcccgttttgacagctcta 26137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University