View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5068_low_1 (Length: 499)
Name: NF5068_low_1
Description: NF5068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5068_low_1 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 9 - 499
Target Start/End: Complemental strand, 2564676 - 2564197
Alignment:
| Q |
9 |
gacatcatcatgggattgttacctagtatgtagtccacctatgttatgtacacattcaatttttagttataataattatgaaccaaaataataaagaaat |
108 |
Q |
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| T |
2564676 |
gacatcttcatgggattgttacctagtatgtagtccacctatgttatgtacacattcaatttttagttataataattatgaaccaaaataataaagaaat |
2564577 |
T |
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| Q |
109 |
gggcttaatgtctta-gagtcataaattagtgtacaaaatacctgtgattttgcaaaggctttaatttcagaggaggtgaaattggtagagccacaatga |
207 |
Q |
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| T |
2564576 |
gggctaaatgtcttaagagtcataaattagtgtacaaaatacctgtgattttgcaaaggctttaatttcagaggaggtgaaattggtagagccacaatga |
2564477 |
T |
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| Q |
208 |
attccatcaatatgatttttgtttaggattttggagaaaatgaatagtaccatggttgaggtcgtggtgtattgcaaattattactatctctagtataca |
307 |
Q |
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| T |
2564476 |
attccatcaatattatttttgtttaggattttggagaaaatgaatagtaccatggttgaggtcgtggtgtattgcaaattattactatctctagtataca |
2564377 |
T |
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| Q |
308 |
aaagtccacctgagttaataataaatcaaatgctaattcagctcattccatcaataatgaattaatgttgattgaaataagattgacctataagtaaata |
407 |
Q |
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| T |
2564376 |
aaagtccacctgagttaataa------------taattcagctcattccatcaataatgaattaatgttgattgaaataagattgacctataagtaaata |
2564289 |
T |
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| Q |
408 |
tataccaggagnnnnnnnaatctgtagagagtaacttcctggcatcaaagcacatataaatgattcaccatcactatgaatctttgctaagt |
499 |
Q |
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| T |
2564288 |
tataccaggtgtttttttaatctgtagagagtaacttccttgcatcaaagcacatataaatgattcaccatcactatgaatctttgctaagt |
2564197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 146 - 333
Target Start/End: Complemental strand, 2574433 - 2574246
Alignment:
| Q |
146 |
atacctgtgattttgcaaaggctttaatttcagaggaggtgaaattggtagagccacaatgaattccatcaatatgatttttgtttaggattttggagaa |
245 |
Q |
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| T |
2574433 |
atacctgtaattttgcaaaggctctaatctcagagggtgaaaaatgggcagagccacagtgtattccatcaatatggtttttgtttaagattttggagaa |
2574334 |
T |
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| Q |
246 |
aatgaatagtaccatggttgaggtcgtggtgtattgcaaattattactatctctagtatacaaaagtccacctgagttaataataaat |
333 |
Q |
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| T |
2574333 |
aatgaatagtaccatggttgaggttgtggtatattgcaaattactgctatctctaatatacagaagcccacctgagttaacaataaat |
2574246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 2574570 - 2574502
Alignment:
| Q |
9 |
gacatcatcatgggattgttacctagtatgtagtccacctatgt--tatgtacacattcaatttttagt |
75 |
Q |
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| T |
2574570 |
gacatcttcatgggattgtttcctagtatgtagtccacctatgtaatatgtacacattcaacttttagt |
2574502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 430 - 497
Target Start/End: Complemental strand, 2574148 - 2574081
Alignment:
| Q |
430 |
tgtagagagtaacttcctggcatcaaagcacatataaatgattcaccatcactatgaatctttgctaa |
497 |
Q |
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| T |
2574148 |
tgtagagagctacttcctggcatcaatgcacatataaatgattcagcatcagtctgaaacttggctaa |
2574081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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