View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5068_low_2 (Length: 332)
Name: NF5068_low_2
Description: NF5068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5068_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 317
Target Start/End: Complemental strand, 41613583 - 41613286
Alignment:
| Q |
20 |
tgagaaaatagattattaccgaaaaagccacgcgatgatgaagataaatcctggggcaaggtttggcatggctgttcccattgctgctgatgttagattg |
119 |
Q |
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| T |
41613583 |
tgagaaaatagattattaccgaaaaagccacgcgatgatgaagataaatcctggggcaaggtttggcatggctgttcccattgctgctgatgttagattg |
41613484 |
T |
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| Q |
120 |
attcctttcaggaataaagattggaacagagttacactgcataagttcattcataccaatgatcaaaatatagaaatccgaaagctagtatttaaccgtc |
219 |
Q |
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| T |
41613483 |
attcctttcaggaataaagattggaacagagttacactgcataagttcattcataccaatgatcaaaatatagaaatccgaaagctagtatttaaccgtc |
41613384 |
T |
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| Q |
220 |
attctttcgacgaatttcagtattagtaagcaaacatgtagaaattgtacaggatcatcaatgatttagaattgtcaacatattaccaatgtatatac |
317 |
Q |
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| T |
41613383 |
attctttcgacgaatttcagtattagtaagcaaacatgtagaaattgtacaggatcatcaatgatttagaattgtcaacatattaccaatgtatatac |
41613286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 34 - 139
Target Start/End: Original strand, 3857996 - 3858101
Alignment:
| Q |
34 |
attaccgaaaaagccacgcgatgatgaagataaatcctggggcaaggtttggcatggctgttcccattgctgctgatgttagattgattcctttcaggaa |
133 |
Q |
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|||||| |||| ||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||| ||| |||||||||||||| |||||||| |
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| T |
3857996 |
attacccaaaagtccatgcgatgatgaagataaaacctggggcaaggtttggcatagcagttcccattgctggtgaagttagattgattcccttcaggaa |
3858095 |
T |
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| Q |
134 |
taaaga |
139 |
Q |
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| T |
3858096 |
taaaga |
3858101 |
T |
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