View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5068_low_4 (Length: 227)
Name: NF5068_low_4
Description: NF5068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5068_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 3400962 - 3401174
Alignment:
| Q |
1 |
atcctgaagggtgctaatatttttgttcaaaacttcatgttatgcatctcattgttgttttagttattatctcgtgtaaatctacactgatgtggctgtc |
100 |
Q |
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| T |
3400962 |
atcctgaagggtgctaatatttttgttcaaaacttcatgttatgcatctcattgttgttttagttattatctcgtgtaaatctacgctgatgtggctgtc |
3401061 |
T |
|
| Q |
101 |
ttatggtgtgaagtggaacacaaattattgttcttttgattcaatataacttgcttgtagaataacttgctgaatagggttcagttaatcttgtgatttg |
200 |
Q |
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| T |
3401062 |
ttatggtgtgaagtggaacacaaattattgttcttttgattcaatataacttgcttgtagaataactggctgaatagggttcagttaatcttgtgatttg |
3401161 |
T |
|
| Q |
201 |
aagtaatcaaata |
213 |
Q |
| |
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||||||||||||| |
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| T |
3401162 |
aagtaatcaaata |
3401174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 3401175 - 3401249
Alignment:
| Q |
153 |
gcttgtagaataacttgctgaatagggttcagttaatcttgtgatttgaagtaatcaaataaacaagaaatctga |
227 |
Q |
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| T |
3401175 |
gcttgtagaataactgtctgaatagggttcagttaatcttgtgatttgaagtaatcaaataaacaagaaatctga |
3401249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 20864492 - 20864562
Alignment:
| Q |
153 |
gcttgtagaataacttgctgaatagggttcagttaatcttgtgatttgaagtaatcaaataaacaagaaat |
223 |
Q |
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| T |
20864492 |
gcttgtaaaataactggctgaatagggttcagttaatcttgtgatttgaagtaatcaaataaacaagaaat |
20864562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 7131862 - 7131668
Alignment:
| Q |
12 |
tgctaatatttttgttcaaaacttcatgttatgcatctcattgttgttttagttattatctcgtgtaaatctacactgatgtggctgtcttatggtgtga |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||| |||||||| |||||| |||| |
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| T |
7131862 |
tgctaatatttttgttcaaaacttcatgttatgcatctcattgttgttttagttattatctcatggaaatctatgctgaggtggctgttttatggggtga |
7131763 |
T |
|
| Q |
112 |
agtggaacacaaattattgttcttttgattcaatataacttgcttgtagaataacttgctgaatagggttcagttaatcttgtgatttgaagtaa |
206 |
Q |
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| T |
7131762 |
agtggaacacaaattattgttctattgatttgatataacttgcttgtagaagaactggatgaatagggttcagttaatcttgtgacttgaagtaa |
7131668 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 123 - 207
Target Start/End: Complemental strand, 7131460 - 7131376
Alignment:
| Q |
123 |
aattattgttcttttgattcaatataacttgcttgtagaataacttgctgaatagggttcagttaatcttgtgatttgaagtaat |
207 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||| |||||||||| |
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| T |
7131460 |
aattattgttctattgattcaatataacttgcttgtagaagaactggatgaatagggttcagttaatcttgtgacttgaagtaat |
7131376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 53044422 - 53044216
Alignment:
| Q |
1 |
atcctgaagggtgctaatatttttgttcaaaacttcatgttatg-----catctcattgttgttttagttattatctcgtgtaaatctacactgatgtgg |
95 |
Q |
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|||||||||||||||||||||| |||| ||||||||| |||||| |||||||||||| ||||||||||| |||||||||||| |||| ||| || |
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| T |
53044422 |
atcctgaagggtgctaatatttatgtttaaaacttcaagttatgttatacatctcattgtttttttagttattctctcgtgtaaatttacaatgagacgg |
53044323 |
T |
|
| Q |
96 |
ctgtcttatggtgtgaagtggaacacaaattatt-gttcttttgattcaatataacttgcttgtagaataacttgctgaatagggttcagttaatcttgt |
194 |
Q |
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|||| |||||||||||||| ||||| | | |||| |||| |||||||||||||||||||||||| || |||| | ||||||||||| ||||| |||| | |
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| T |
53044322 |
ctgttttatggtgtgaagtagaacagagaatattaattctattgattcaatataacttgcttgtaaaagaactggttgaatagggtttagttattctttt |
53044223 |
T |
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| Q |
195 |
gatttga |
201 |
Q |
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||||||| |
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| T |
53044222 |
gatttga |
53044216 |
T |
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