View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5069-Insertion-1 (Length: 699)
Name: NF5069-Insertion-1
Description: NF5069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5069-Insertion-1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 476; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 8 - 523
Target Start/End: Complemental strand, 40513664 - 40513149
Alignment:
| Q |
8 |
agtattagatcctaggggacaactcatacatcgttggaacaagatatttttagtagcatgtttagtttctttgtttgtggatccactgttcttttatttg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40513664 |
agtattagatcctaggggacaactcatacatcgttggaacaagatatttttagtagcatgtttagtttctttgtttgtggatccactgttcttttatttg |
40513565 |
T |
|
| Q |
108 |
ccagtggttagagaagaagtttgcattgatattggaaaaactcttgaagttattctcacagttgttagatcatttggagatttgttttacatagttcaga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40513564 |
ccagtggttagagaagaagtttgcattgatattggaaaaactcttgaagttattctcacagttgttagatcatttggagatttgttttacatagttcaga |
40513465 |
T |
|
| Q |
208 |
tttgtatgaagtttcgtacagcttatgttgctccttcttccaaggtttttggtagaggagaacttgttcttacctattctaagattgctcttaggtactt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40513464 |
tttgtatgaagtttcgtacagcttatgttgctccttcttccaaggtttttggtagaggagaacttgttcttacctattctaagattgctcttaggtactt |
40513365 |
T |
|
| Q |
308 |
cagcaagggtttttggttagactttattgccgcattgcctcttcctcaggtacatatgagtctgtttgtttatgtttaaaaggccactttggtccttgaa |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
40513364 |
cagcaagggtttttggttagactttattgccgcattgcctcttcctcaggtacctatgagtctgtttgtttatgtttaaaaggccgctttggtccttgaa |
40513265 |
T |
|
| Q |
408 |
tgtgtcagatattgtccctacaatcctaaattaaccaaaattacgaaacatccttaaaatgcgtctcctagttatttagtttgattcttataagtgtatc |
507 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
40513264 |
tgtgtcagatattgtccctacaatccctaattaaccaaaattacaaaacatccttaaaaagcgtctcgtagttatttagtttgattcttaaaagtgtatc |
40513165 |
T |
|
| Q |
508 |
cactggttagtttgat |
523 |
Q |
| |
|
|||| |||| |||||| |
|
|
| T |
40513164 |
cactagttaatttgat |
40513149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 230 - 523
Target Start/End: Complemental strand, 40482768 - 40482475
Alignment:
| Q |
230 |
ttatgttgctccttcttccaaggtttttggtagaggagaacttgttcttacctattctaagattgctcttaggtacttcagcaagggtttttggttagac |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40482768 |
ttatgttgctccttcttccaaggtttttggtagaggagaacttgttcttacctattctaagattgctcttaggtacttcagcaagggtttttggttagac |
40482669 |
T |
|
| Q |
330 |
tttattgccgcattgcctcttcctcaggtacatatgagtctgtttgtttatgtttaaaaggccactttggtccttgaatgtgtcagatattgtccctaca |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
40482668 |
tttattgccgcattgcctcttcctcaggtacctatgagtctgtttgtttatgtttaaaaggccgctttggtccttgaatgtgtcagatattgtccctaca |
40482569 |
T |
|
| Q |
430 |
atcctaaattaaccaaaattacgaaacatccttaaaatgcgtctcctagttatttagtttgattcttataagtgtatccactggttagtttgat |
523 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||| |||| |||||| |
|
|
| T |
40482568 |
atccctaattaaccaaaattacaaaacatccttaaaaagcgtctcgtagttatttagtttgattcttaaaagtgtatccactagttaatttgat |
40482475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 514 - 655
Target Start/End: Complemental strand, 40482515 - 40482374
Alignment:
| Q |
514 |
ttagtttgattcttataagtgtatccactggttagtttgatcgtttaatgcgtcttttatttgtcagtttagtctatcaaattactagtagataatatgc |
613 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40482515 |
ttagtttgattcttaaaagtgtatccactagttaatttgatcgtttaatgtgtcttttatttgtcagtttagtctatcaaattactagtagataatatgc |
40482416 |
T |
|
| Q |
614 |
tcaagggtatttatgtaattttgatacattcaacaattatag |
655 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40482415 |
tcaagggtatttatgtaattttgatacattcaacaattatag |
40482374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 514 - 655
Target Start/End: Complemental strand, 40513189 - 40513048
Alignment:
| Q |
514 |
ttagtttgattcttataagtgtatccactggttagtttgatcgtttaatgcgtcttttatttgtcagtttagtctatcaaattactagtagataatatgc |
613 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40513189 |
ttagtttgattcttaaaagtgtatccactagttaatttgatcgtttaatgtgtcttttatttgtcagtttagtctatcaaattactagtagataatatgc |
40513090 |
T |
|
| Q |
614 |
tcaagggtatttatgtaattttgatacattcaacaattatag |
655 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40513089 |
tcaagggtatttatgtaattttgatacattcaacaattatag |
40513048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 10 - 275
Target Start/End: Original strand, 21611600 - 21611865
Alignment:
| Q |
10 |
tattagatcctaggggacaactcatacatcgttggaacaagatatttttagtagcatgtttagtttctttgtttgtggatccactgttcttttatttgcc |
109 |
Q |
| |
|
|||| ||||||||||||||| ||| || | ||||||||||| || || |||||||||||| ||||||||||||||||||| || |||||||||||||| |
|
|
| T |
21611600 |
tatttgatcctaggggacaaaccattcaccaatggaacaagattttcttggtagcatgtttaatttctttgtttgtggatcctctcttcttttatttgcc |
21611699 |
T |
|
| Q |
110 |
agtggttagagaagaagtttgcattgatattggaaaaactcttgaagttattctcacagttgttagatcatttggagatttgttttacatagttcagatt |
209 |
Q |
| |
|
| | ||| ||| ||||| |||||||||||||||| | | |||||||| | |||| | || |||||||| ||| || | |||||| | |||| ||| |
|
|
| T |
21611700 |
aatagttcaagatgaagtgtgcattgatattggaatagcagttgaagttttcctcataattattagatcaattgcggacgtcttttacgtcattcacatt |
21611799 |
T |
|
| Q |
210 |
tgtatgaagtttcgtacagcttatgttgctccttcttccaaggtttttggtagaggagaacttgtt |
275 |
Q |
| |
|
| |||| ||||| ||| || |||||||| |||||||| | ||||||||| ||||||||||||||| |
|
|
| T |
21611800 |
ttcatgaggtttcatacggcatatgttgcaccttcttctagggtttttgggagaggagaacttgtt |
21611865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 28261535 - 28261605
Alignment:
| Q |
42 |
tggaacaagatatttttagtagcatgtttagtttctttgtttgtggatccactgttcttttatttgccagt |
112 |
Q |
| |
|
|||||||| ||||| |||| ||| ||||| |||| ||||||||||||||||| |||||||| || ||||| |
|
|
| T |
28261535 |
tggaacaaaatattcttagcagcttgtttgatttcattgtttgtggatccacttttcttttacttaccagt |
28261605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University