View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5069_high_3 (Length: 226)
Name: NF5069_high_3
Description: NF5069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5069_high_3 |
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| [»] scaffold0891 (2 HSPs) |
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| [»] scaffold1335 (1 HSPs) |
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| [»] scaffold2086 (1 HSPs) |
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| [»] scaffold1996 (1 HSPs) |
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Alignment Details
Target: scaffold0891 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 4193 - 3998
Alignment:
| Q |
21 |
tcaacaaaatacatagaccatactaaacttgtatttggaattcaaatagctttattatcaataacctctttgataaacttctggaaattattgtatgatg |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4193 |
tcaacaaaatacatagaccatactaaacttgtatttggaattcaaatagctttattatcaataacctctttgataaacttctggaaattattgtatgatg |
4094 |
T |
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| Q |
121 |
atcccctcaaattagttctagctttcttcttccactccaagcactttgtctcaattcttcttccttttctccttccatcatttccaccacaggttct |
217 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
4093 |
at-ccctcaaattagttctagctttcttcttccactccaagcactttgtctcaattcttcttccttttctccttccatcatttccatcacaagttct |
3998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 3687 - 3620
Alignment:
| Q |
140 |
agctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccatcatttcca |
206 |
Q |
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| T |
3687 |
agctttcttcttccattccaagcacttgtgtctcatttcttttcccttttctcgtttcatcatttcca |
3620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 21 - 218
Target Start/End: Original strand, 35774277 - 35774483
Alignment:
| Q |
21 |
tcaacaaaatacatagaccata--ctaaacttgtatttggaattcaaatagctttattatcaataacctctttgataaacttctggaaattattgtatga |
118 |
Q |
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| T |
35774277 |
tcaacaaaatatatagaccatatactagacttgtatttgggactcaaatagctttatgatgaagaacctctttgattaacttctggaaattattgtatga |
35774376 |
T |
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| Q |
119 |
tgatcccctcaaattag------ttctagctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccatcatttccaccaca |
211 |
Q |
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|||||| | |||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| | ||||||||||||||||||||| ||| ||| |
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| T |
35774377 |
tgatccacccaaattagtagcttttctagctttcttcttccactccaagcacttgtgtctcatttcttttcccttttctccttccatcatttgcacaaca |
35774476 |
T |
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| Q |
212 |
ggttctg |
218 |
Q |
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|||||| |
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| T |
35774477 |
agttctg |
35774483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 35848122 - 35848262
Alignment:
| Q |
83 |
aacctctttgataaacttctggaaattattgtatgatgatcccctcaaattagt------tctagctttcttcttccactccaagcac-tttgtctcaat |
175 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||| | ||||||||| | ||||||||||||||||| |||| | | ||||||||| | |
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| T |
35848122 |
aacctctttgattaacttatggaaattattgtatgatgatcctcccaaattagtagcatctgtagctttcttcttccacaccaaactcttttgtctcatt |
35848221 |
T |
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| Q |
176 |
tcttcttccttttctccttccatcatttccaccacaggttc |
216 |
Q |
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| T |
35848222 |
tcttttcctttttctccttccatcatttccatcacaagttc |
35848262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 217
Target Start/End: Original strand, 35865814 - 35865934
Alignment:
| Q |
104 |
gaaattattgtatgatgatcccctcaaattagt------tctagctttcttcttccactccaagcacttt-gtctcaattcttcttccttttctccttcc |
196 |
Q |
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||||||| ||||||||||||| | ||||||||| | ||||||||||||||||| |||| | |||| |||||| ||||| | | |||||||||||| |
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| T |
35865814 |
gaaattaatgtatgatgatcctcccaaattagtagcatctgtagctttcttcttccacaccaaactcttttgtctcatttcttttcctttttctccttcc |
35865913 |
T |
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| Q |
197 |
atcatttccaccacaggttct |
217 |
Q |
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|||||||||| |||| ||||| |
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| T |
35865914 |
atcatttccatcacaagttct |
35865934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 141 - 1
Alignment:
| Q |
83 |
aacctctttgataaacttctggaaattattgtatgatgatcccctcaaattagt------tctagctttcttcttccactccaagcac-tttgtctcaat |
175 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||| | ||||||||| | ||||||||||||||||| |||| | | ||||||||| | |
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| T |
141 |
aacctctttgattaacttatggaaattattgtatgatgatcctcccaaattagtagcatctgtagctttcttcttccacaccaaactcttttgtctcatt |
42 |
T |
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| Q |
176 |
tcttcttccttttctccttccatcatttccaccacaggttc |
216 |
Q |
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| T |
41 |
tcttttcctttttctccttccatcatttccatcacaagttc |
1 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 551 - 478
Alignment:
| Q |
139 |
tagctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccatcatttccaccaca |
211 |
Q |
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|||||||||||||||| ||||||||||| ||||||| ||||| | |||||||||||||||||||||||| |||| |
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|
| T |
551 |
tagctttcttcttccattccaagcacttatgtctcatttcttttcccttttctccttccatcatttccatcaca |
478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 551 - 478
Alignment:
| Q |
139 |
tagctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccatcatttccaccaca |
211 |
Q |
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|||||||||||||||| ||||||||||| ||||||| ||||| | |||||||||||||||||||||||| |||| |
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|
| T |
551 |
tagctttcttcttccattccaagcacttatgtctcatttcttttcccttttctccttccatcatttccatcaca |
478 |
T |
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