View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5069_low_1 (Length: 396)
Name: NF5069_low_1
Description: NF5069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5069_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 43868220 - 43868600
Alignment:
| Q |
1 |
tgccagttttcgatgccaacccttttgatttagagacttgtactgtgaaaaatgatgctgttgattttgaggaaatgtgtgacttggatagtttctgtga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43868220 |
tgccagttttcgatgccaacccttttgatttagagacttgtactgtgaaaaatgatgctgttgattttgaggaaatgtgtgacttggatagtttctgtga |
43868319 |
T |
|
| Q |
101 |
gtttgatgttgatcttgctgaatttgcagctaatgttgaaagtttacttggtgttgggagtagtgagattcaagagaattcatcaggacaagtgtttgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43868320 |
gtttgatgttgatcttgctgaatttgcagctaatgttgaaagtttacttggtgttgggagtagtgagattcaagagaattcatcaggacaagtgtttgat |
43868419 |
T |
|
| Q |
201 |
tataaacaagagaatgaaatggatgcatccaaaaatgaaatgttaaaggttaaggatgaagaacttgatgatttggaatcagtttttgacatgacaagtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43868420 |
tataaacaagagaatgaaatggatgcatccaaaagtgaaatgttaaaggttaaggatgaagaacttgatgatttggaatcagtttttgacatgacaagtg |
43868519 |
T |
|
| Q |
301 |
atgatgtttttcattggaatattgataataatgatgtatcactagcacaacaagagaaagagtatatgcctttgagtaata |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43868520 |
atgatgtttttcattggaatattgataataatgatgtatcactagcacaacaagagaaagagtatatgcctttgagtaata |
43868600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University