View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5070-Insertion-1 (Length: 1196)
Name: NF5070-Insertion-1
Description: NF5070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5070-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 362 - 398
Target Start/End: Complemental strand, 34145806 - 34145770
Alignment:
| Q |
362 |
agcttgagtattctatagtgtcacctaaatagcttgg |
398 |
Q |
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| T |
34145806 |
agcttgagtattctatagtgtcacctaaatagcttgg |
34145770 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 226
Target Start/End: Original strand, 33223520 - 33223625
Alignment:
| Q |
121 |
agggcatgctgtccagttccaagtccttgtcatggatacttgttgaaacatacaaagcaatgcaaaaggaggatgttcagaaggacccttcaccgaaaca |
220 |
Q |
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| T |
33223520 |
agggcatgccttccaattccaaatccttgttgtagatacttgttgaaacatttgaagcaatgtcatagaagggtgttcaaaaggacccttcattgaaaca |
33223619 |
T |
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| Q |
221 |
tccaaa |
226 |
Q |
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|||||| |
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| T |
33223620 |
tccaaa |
33223625 |
T |
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