View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5070-Insertion-2 (Length: 837)

Name: NF5070-Insertion-2
Description: NF5070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5070-Insertion-2
NF5070-Insertion-2
[»] chr2 (7 HSPs)
chr2 (512-837)||(23944836-23945180)
chr2 (26-155)||(23945542-23945671)
chr2 (368-468)||(23945224-23945322)
chr2 (239-304)||(23945393-23945458)
chr2 (27-128)||(38106206-38106305)
chr2 (379-447)||(38106748-38106815)
chr2 (239-304)||(38106413-38106478)
[»] chr1 (3 HSPs)
chr1 (539-622)||(3791484-3791567)
chr1 (539-622)||(25941564-25941647)
chr1 (381-446)||(3791652-3791718)
[»] chr4 (3 HSPs)
chr4 (542-611)||(16048386-16048455)
chr4 (539-611)||(16022800-16022872)
chr4 (381-430)||(16048592-16048641)


Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 512 - 837
Target Start/End: Complemental strand, 23945180 - 23944836
Alignment:
Q  512 attggcctatgattatactatatccaattgtttgaggtgttttggagccaagcccctgtttacagggagaacctacttggtgaagggacattcatatgac 611  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23945180 attggcctatgattatactatatccgattgtttgaggtgttttggagccaagcccctgtttacagggagaacctacttggtgaagggacattcatatgac 23945081  T
Q  612 attaatggattcaatgaggctttgattgtgtttcaaaatcatcatatttttgtatttttaccataatctttgccgaaaaatttggtttagaacagtttaa 711  Q
    ||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||  |||||||||||||||||||||| ||||||  ||||||    
T  23945080 attaatggattcaatgaggctttgattatgtttcaatattatcatatttttgtatttttacggtaatctttgccgaaaaatttggattagaatggtttaa 23944981  T
Q  712 t--------tgttctattctgttaaa----------ttattgtagtttagtttcattgagtttttaactaaagatcctcttatcccttttaattggattt 793  Q
    |        |||| | ||||||||||          ||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  23944980 tcgttgttctgttatgttctgttaaatcattgtagtttattgttgtttagtttcattgagtttttaactaaggattctcttatcccttttaattggattt 23944881  T
Q  794 agagtctg-aaaaagaagctcatatatttggtgttgtctatcagc 837  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  23944880 agagtctgaaaaaagaagctcatatatttggtgttgtctatcagc 23944836  T

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Target: chr2; HSP #2
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 26 - 155
Target Start/End: Complemental strand, 23945671 - 23945542
Alignment:
Q  26 ttttgcctcactacacctttagcttgttttcgaatatattccatgaaaatcaaaagctagtcatagaggcacaaattgaatcataggcggttttcacgtg 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23945671 ttttgcctcactacacctttagcttgttttcgaatatattccatgaaaatcaaaagctagtcatagaggcacaaattgaatcataggcggttttcacgtg 23945572  T
Q  126 gtgctttaaccattcaatgtttatgcctct 155  Q
    ||||||||||||||||||||||||||||||    
T  23945571 gtgctttaaccattcaatgtttatgcctct 23945542  T

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Target: chr2; HSP #3
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 368 - 468
Target Start/End: Complemental strand, 23945322 - 23945224
Alignment:
Q  368 gatgacaaattattcagctttatgccagttctgcttctgaaaattcgtgactgagagagctgtaatatattctgagcctttaacataaactaaacaattc 467  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  23945322 gatgacaaattattcagctttatgccagttctgcttctgaaaattcgtgactgagagagctgtaatatattctgagcc--taacataaactaaacaattc 23945225  T

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Target: chr2; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 239 - 304
Target Start/End: Complemental strand, 23945458 - 23945393
Alignment:
Q  239 ccgcgcttctgagttttttgtatgaagtatattggaataatggttgaatttcttaatatgagccaa 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23945458 ccgcgcttctgagttttttgtatgaagtatattggaataatggttgaatttcttaatatgagccaa 23945393  T

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Target: chr2; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 27 - 128
Target Start/End: Original strand, 38106206 - 38106305
Alignment:
Q  27 tttgcctcactacacctttagcttgttttcgaatatattccatgaaaatcaaaagctagtcatagaggcacaaattgaatcataggcggttttcacgtgg 126  Q
    |||||||||||||||||||||||||||||| || | ||| ||||||||||||| |||||||||||||||| ||||||| ||   ||||||||||||||||    
T  38106206 tttgcctcactacacctttagcttgttttccaaaa-atttcatgaaaatcaaa-gctagtcatagaggcagaaattgattctctggcggttttcacgtgg 38106303  T

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Target: chr2; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 379 - 447
Target Start/End: Original strand, 38106748 - 38106815
Alignment:
Q  379 attcagctttatgccagttctgcttctgaaaattcgtgactgagagagctgtaatatattctgagcctt 447  Q
    ||||||||| |||||||||||||||||||||| |||||| ||| ||||||||| |||||||||||||||    
T  38106748 attcagcttaatgccagttctgcttctgaaaa-tcgtgattgatagagctgtagtatattctgagcctt 38106815  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 38106413 - 38106478
Alignment:
Q  239 ccgcgcttctgagttttttgtatgaagtatattggaat-aatggttgaatttcttaatatgagccaa 304  Q
    |||||||||||||||||   |||||||||||| ||||| ||||||||||||||||||||||||||||    
T  38106413 ccgcgcttctgagttttcc-tatgaagtatatcggaatcaatggttgaatttcttaatatgagccaa 38106478  T

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Target: chr1 (Bit Score: 56; Significance: 9e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 539 - 622
Target Start/End: Complemental strand, 3791567 - 3791484
Alignment:
Q  539 ttgtttgaggtgttttggagccaagcccctgtttacagggagaacctacttggtgaagggacattcatatgacattaatggatt 622  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||   |||||||||||| | ||||||||    
T  3791567 ttgtttgaggtgttgtggagccaagcccctgttttcagggagaacctacttggtgaagcttcattcatatgacttcaatggatt 3791484  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 539 - 622
Target Start/End: Complemental strand, 25941647 - 25941564
Alignment:
Q  539 ttgtttgaggtgttttggagccaagcccctgtttacagggagaacctacttggtgaagggacattcatatgacattaatggatt 622  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||   |||||| ||||||| ||||||||    
T  25941647 ttgtttgaggtgttgtggagccaagcccctgttttcagggagaacctacttggtgaagcttcattcaaatgacatcaatggatt 25941564  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 381 - 446
Target Start/End: Complemental strand, 3791718 - 3791652
Alignment:
Q  381 tcagctttatgccagttctgcttctgaaaattcgtgactgagagagctg-taatatattctgagcct 446  Q
    ||||||| |||||||||||||||||||||| |||||| ||  ||||||| ||| || ||||||||||    
T  3791718 tcagcttaatgccagttctgcttctgaaaaatcgtgattgttagagctgttaaaatgttctgagcct 3791652  T

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Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 542 - 611
Target Start/End: Complemental strand, 16048455 - 16048386
Alignment:
Q  542 tttgaggtgttttggagccaagcccctgtttacagggagaacctacttggtgaagggacattcatatgac 611  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  16048455 tttgaggtgttgtggagccaagcccctgtttacagggagaacctacttggtgaagcttcattcatatgac 16048386  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 539 - 611
Target Start/End: Complemental strand, 16022872 - 16022800
Alignment:
Q  539 ttgtttgaggtgttttggagccaagcccctgtttacagggagaacctacttggtgaagggacattcatatgac 611  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||   ||||||||||||    
T  16022872 ttgtttgaggtgttgtggagccaagcccctgtttacagggataacctacttggtgaagcttcattcatatgac 16022800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 430
Target Start/End: Complemental strand, 16048641 - 16048592
Alignment:
Q  381 tcagctttatgccagttctgcttctgaaaattcgtgactgagagagctgt 430  Q
    ||||||| |||||||||||||||||||||| |||||| ||  ||||||||    
T  16048641 tcagcttaatgccagttctgcttctgaaaaatcgtgattgttagagctgt 16048592  T

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