View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5070-Insertion-3 (Length: 471)
Name: NF5070-Insertion-3
Description: NF5070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5070-Insertion-3 |
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| [»] scaffold0252 (1 HSPs) |
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| [»] scaffold0039 (2 HSPs) |
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Alignment Details
Target: scaffold0252 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 8 - 462
Target Start/End: Original strand, 23125 - 23579
Alignment:
| Q |
8 |
attttgtggctaaattaactcttttcactcacctatatatacacttacacacacctttctattcattgaatcaatttgcaaatcatcaaattgtttgagt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
23125 |
attttgtggctaaattaactcttttcactcacctatatatacccttacacacacctttctattcattcaatcaatttgcaaatcatcaaattgtttaagt |
23224 |
T |
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| Q |
108 |
agagataatacccttgaaaaattaaccacaccaannnnnnnnaacaagctaaaatgcgcatcaattattgaagacactattcaaaatttagcggtctgat |
207 |
Q |
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| T |
23225 |
agagataatacccttgaaaaagtaaccacaccaattttttttaacaagctaaaatgcgcatcaattattgaagacactattcaaaatttagcggtctgat |
23324 |
T |
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| Q |
208 |
caagatcaatctaggataacaaaaacataattaaaaaatgatttttcaatcataatattaacgcgtattaaacaaaaaatgcaataatatttgtcatgag |
307 |
Q |
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| T |
23325 |
caagatcaatttaggataacaaaaacataattaaaaaatgttttttcaatcataatattaacgcgtattaaacaaaaaatgccataatatttgtcatgag |
23424 |
T |
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| Q |
308 |
tcctatgtttgatgagagatgatctaaaaatgtgcatataagtttcttnnnnnnntgtatacaagtggggataatcttcacctcacaaaccgatttttgg |
407 |
Q |
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| T |
23425 |
tcctatgtttgatgagagatgatctaaaaatgtgcatataagttccttaaaaaaatgtatataagtggggataatcttcacctcacaaaccgatttttgg |
23524 |
T |
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| Q |
408 |
taacgcgttagacttatccataatttttaaaatattaaggattgtcgtgacttat |
462 |
Q |
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| T |
23525 |
taacgcgttagacttatcgacaatttttaaaatattagggattgtcgtgacttat |
23579 |
T |
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Target: scaffold0039 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 63785 - 63869
Alignment:
| Q |
10 |
tttgtggctaaattaactcttttcactcac--ctatatatacacttacaca--cacctttctattcattgaatcaatttgcaaat |
90 |
Q |
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| T |
63785 |
tttgtggctaaatttactcctttcactcacacctatatatactcttacacatacacctttctattcactgaatcaatttgcaaat |
63869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 66582 - 66498
Alignment:
| Q |
10 |
tttgtggctaaattaactcttttcactcac--ctatatatacacttacaca--cacctttctattcattgaatcaatttgcaaat |
90 |
Q |
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| T |
66582 |
tttgtggctaaatttactcctttcactcacacctatatatactcttacacatacacctttctattcactgaatcaatttgcaaat |
66498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 18450109 - 18450195
Alignment:
| Q |
8 |
attttgtggctaaattaactcttttcact--cacctatatatacacttacacacacc--tttctattcattgaatcaatttgcaaat |
90 |
Q |
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| T |
18450109 |
attttgtggctaaattaactctttccactcacacttatatatatccttacacacaccctttcctattcatagaatcaatttgaaaat |
18450195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 20685834 - 20685754
Alignment:
| Q |
12 |
tgtggctaaattaactcttttcactcac-ct-atatatacacttacacacacctttctattcattgaatcaatttgcaaat |
90 |
Q |
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| T |
20685834 |
tgtggttaaattaactctttttactcacactcatatatacctttacacacacgttcccattcatagaatcaatttgcaaat |
20685754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 4006724 - 4006779
Alignment:
| Q |
8 |
attttgtggctaaattaactcttttcactcac--ctatatatacacttacacacac |
61 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||| ||||||||||| |
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| T |
4006724 |
attttgtggctaaattaactcttttccctcacatctatatataaccttacacacac |
4006779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 4012116 - 4012171
Alignment:
| Q |
8 |
attttgtggctaaattaactcttttcactcac--ctatatatacacttacacacac |
61 |
Q |
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| T |
4012116 |
attttgtggctaaattaactcttttccctcacatctatatataaccttacacacac |
4012171 |
T |
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