View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5070-Insertion-4 (Length: 403)
Name: NF5070-Insertion-4
Description: NF5070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5070-Insertion-4 |
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| [»] chr1 (5 HSPs) |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 8 - 403
Target Start/End: Complemental strand, 14878884 - 14878489
Alignment:
| Q |
8 |
ttaaatactcttgatgttatattgctatgtttttccaactaagctagaacctcaagtttaatccacctcatatcaattgatcttaataaatctttaatca |
107 |
Q |
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| T |
14878884 |
ttaaatactcttgatgttatattgctatgtttttccaactaagctagaacctcaagtttaattcacctcatatcaattgatcttaataaatctttaatca |
14878785 |
T |
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| Q |
108 |
ttcattaatccatttgcaaccacgtgcaggtaacacgcctcaagtgtagtggttttatctttgctcttcgtatgaaccatacattgagtgatgcatcagg |
207 |
Q |
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| T |
14878784 |
ttcattaatccatttgcaaccacgtgcaggtaacacgcctcaagtgtggtggttttatctttgctattcgtatgaaccatacattgagtgatgcatcggg |
14878685 |
T |
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| Q |
208 |
catgcttcaattcatgactgccttaggagagatatctcgtgggatgagcaaaccttcaatctcaccggtgtggtgtagagagcttcttaacgctagggat |
307 |
Q |
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| T |
14878684 |
catgcttcaattcttgagtgccttaggagagatatctcgtgggatgagcaaaccttcaatctcaccggtgtggagcagagagcttcttaatgcaagggat |
14878585 |
T |
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| Q |
308 |
ccaccaagagtgacatgtactcatcgtgaatacgatccagaacccgacaacaaaggaaccatgtttcccttagacgacatggttcaccgcactttc |
403 |
Q |
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| T |
14878584 |
ccaccaagagtgacatataatcatcgtgaatacgatccagaacccgacaacaaaggaaccatgtttcccttagacgacatggttcaccgcactttc |
14878489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 133 - 403
Target Start/End: Original strand, 14758980 - 14759250
Alignment:
| Q |
133 |
gcaggtaacacgcctcaagtgtagtggttttatctttgctcttcgtatgaaccatacattgagtgatgcatcaggcatgcttcaattcatgactgcctta |
232 |
Q |
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| T |
14758980 |
gcaggtaacacgcctcaagtgtggtggtttcatttttgctttccgtatgaaccatacaatgagtgatggatcaggtatgcttcaattcttgaatgcctta |
14759079 |
T |
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| Q |
233 |
ggagagatatctcgtgggatgagcaaaccttcaatctcaccggtgtggtgtagagagcttcttaacgctagggatccaccaagagtgacatgtactcatc |
332 |
Q |
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| T |
14759080 |
ggagaaatatctcgtgggatgagtaaaccttcaatctcaccagtgtggagcagagagcttcttaatgcaagggatccaccaatagtgacatgtactcatc |
14759179 |
T |
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| Q |
333 |
gtgaatacgatccagaacccgacaacaaaggaaccatgtttcccttagacgacatggttcaccgcactttc |
403 |
Q |
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| T |
14759180 |
gtgaatacgatccagaacccgacaacaaaggaaccatgtttcccttagacgacatggttcaccgcactttc |
14759250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 135 - 402
Target Start/End: Complemental strand, 14767814 - 14767547
Alignment:
| Q |
135 |
aggtaacacgcctcaagtgtagtggttttatctttgctcttcgtatgaaccatacattgagtgatgcatcaggcatgcttcaattcatgactgccttagg |
234 |
Q |
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| T |
14767814 |
aggtaacacgcctcaagtgcggtggtttcatttttgctcttcgtctaaaccatacaatgagcgatgcagcgggtttggtccaattcatgagtgccttagg |
14767715 |
T |
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| Q |
235 |
agagatatctcgtgggatgagcaaaccttcaatctcaccggtgtggtgtagagagcttcttaacgctagggatccaccaagagtgacatgtactcatcgt |
334 |
Q |
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| T |
14767714 |
tgaaatttcttgcgggatgaatgaaccttcaatcttaccggtatggcatagggagcttctaaattcaagggatccaccgagagtaacatgcactcatcgt |
14767615 |
T |
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| Q |
335 |
gaatacgatccagaacccgacaacaaaggaaccatgtttcccttagacgacatggttcaccgcacttt |
402 |
Q |
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| T |
14767614 |
gaatacgaacaagttcccgacaccaaaggaacaattattcccttagatgacatggctcatcgctcttt |
14767547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 132 - 403
Target Start/End: Complemental strand, 14786906 - 14786635
Alignment:
| Q |
132 |
tgcaggtaacacgcctcaagtgtagtggttttatctttgctcttcgtatgaaccatacattgagtgatgcatcaggcatgcttcaattcatgactgcctt |
231 |
Q |
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| T |
14786906 |
tgcaggtaacgcgtctcaagtgtggtggtttcatatttgctcttcgtctaaaccatacaattagcgactcatcaggtttatttaaattcttaagtgcctt |
14786807 |
T |
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| Q |
232 |
aggagagatatctcgtgggatgagcaaaccttcaatctcaccggtgtggtgtagagagcttcttaacgctagggatccaccaagagtgacatgtactcat |
331 |
Q |
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| T |
14786806 |
aggagaaatatctcgcggaatgaacgaaccttcaatctcaccggtgtggtgtagagagcttctaaatgcaaggaacccaccaagaattacgtgtactcat |
14786707 |
T |
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| Q |
332 |
cgtgaatacgatccagaacc-cgacaacaaaggaaccatgtttcccttagacgacatggttcaccgcactttc |
403 |
Q |
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| T |
14786706 |
cacgaatatgaagaagtaccacga-aacaaaggaacggtcattcccttagacgacatggttcatcacactttc |
14786635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 131 - 366
Target Start/End: Complemental strand, 14873899 - 14873664
Alignment:
| Q |
131 |
gtgcaggtaacacgcctcaagtgtagtggttttatctttgctcttcgtatgaaccatacattgagtgatgcatcaggcatgcttcaattcatgactgcct |
230 |
Q |
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| T |
14873899 |
gtgcaggtaacacgtttgaaatgcggtggtttcatttttgctcttcgtctaaaccatacgatgagtgacgctgctggtttggtccaattcatgaatgcct |
14873800 |
T |
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| Q |
231 |
taggagagatatctcgtgggatgagcaaaccttcaatctcaccggtgtggtgtagagagcttcttaacgctagggatccaccaagagtgacatgtactca |
330 |
Q |
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| T |
14873799 |
taggcaaaatttcacgtgggatgaacaaaccttcaatctcaccagtatggcatagagagcttctaaacgcaagggatccaccaagagtaacatgcactca |
14873700 |
T |
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| Q |
331 |
tcgtgaatacgatccagaacccgacaacaaaggaac |
366 |
Q |
| |
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| T |
14873699 |
tcatgaatatgaacaagttcccgacaccaaaggaac |
14873664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 125 - 395
Target Start/End: Complemental strand, 84828 - 84558
Alignment:
| Q |
125 |
aaccacgtgcaggtaacacgcctcaagtgtagtggttttatctttgctcttcgtatgaaccatacattgagtgatgcatcaggcatgcttcaattcatga |
224 |
Q |
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| T |
84828 |
aaccatgtgcaggtaacacgcctcaaatgtagaggtttcatttttgctcttcgtttcaaccatacaatgactgatggatcaggtatagttcaattcatga |
84729 |
T |
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| Q |
225 |
ctgccttaggagagatatctcgtgggatgagcaaaccttcaatctcaccggtgtggtgtagagagcttcttaacgctagggatccaccaagagtgacatg |
324 |
Q |
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| T |
84728 |
gtgctttagcagaaatatctcagggtatgagaaaaccttcaatctcaccagtgtggtgcagagaaattctaagcgcaagggatgcaccaagagtgacgtg |
84629 |
T |
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| Q |
325 |
tactcatcgtgaatacgatccagaacccgacaacaaaggaaccatgtttcccttagacgacatggttcacc |
395 |
Q |
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| T |
84628 |
tactcatcgtgaatacgaaccagaacctgacaacaaagcaaacacattttccttagatgacatggtccacc |
84558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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