View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5070-Insertion-5 (Length: 403)

Name: NF5070-Insertion-5
Description: NF5070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5070-Insertion-5
NF5070-Insertion-5
[»] chr1 (6 HSPs)
chr1 (269-403)||(47189299-47189433)
chr1 (241-352)||(51285250-51285361)
chr1 (236-342)||(48494886-48494992)
chr1 (241-341)||(47508240-47508340)
chr1 (241-299)||(5733165-5733223)
chr1 (241-299)||(12307935-12307993)
[»] chr6 (4 HSPs)
chr6 (104-221)||(4150765-4150890)
chr6 (256-337)||(11139353-11139434)
chr6 (241-341)||(92312-92412)
chr6 (13-68)||(4150698-4150753)
[»] chr7 (3 HSPs)
chr7 (279-352)||(32635363-32635436)
chr7 (241-341)||(37125557-37125657)
chr7 (241-285)||(11033491-11033535)
[»] chr8 (1 HSPs)
chr8 (241-341)||(39312538-39312638)
[»] scaffold0026 (1 HSPs)
scaffold0026 (244-313)||(91565-91634)
[»] scaffold1342 (1 HSPs)
scaffold1342 (241-299)||(1231-1289)
[»] chr2 (3 HSPs)
chr2 (241-299)||(4009258-4009316)
chr2 (236-325)||(36620177-36620266)
chr2 (241-338)||(43326105-43326202)
[»] chr4 (1 HSPs)
chr4 (241-341)||(55403338-55403438)
[»] chr5 (1 HSPs)
chr5 (245-338)||(13627363-13627456)


Alignment Details
Target: chr1 (Bit Score: 115; Significance: 3e-58; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 269 - 403
Target Start/End: Original strand, 47189299 - 47189433
Alignment:
Q  269 ccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaaccatgccactatcacttttttctgaaacaacactc 368  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||    
T  47189299 ccatggcctacccattatttttgggaaattaccaaaatacccttgagttaatatgaaatatacaaccatgacactatcacttttttctgaaacaacgctc 47189398  T
Q  369 ttctctcttctgtctggccttgcgcgagttcaact 403  Q
    |||||||||||||||||||||||||||||||||||    
T  47189399 ttctctcttctgtctggccttgcgcgagttcaact 47189433  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 241 - 352
Target Start/End: Original strand, 51285250 - 51285361
Alignment:
Q  241 ggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaaccatgcc 340  Q
    ||||||||||||||||||||||| | | ||||||||  ||||||||||||||||||||| |||||||||||| ||||||||| |||| ||||||||||||    
T  51285250 ggcggagccacgtggggacaggggaaggccatggccaccccattatttttgagaaattaccaaaatacccttaagttaatataaaatctacaaccatgcc 51285349  T
Q  341 actatcactttt 352  Q
    ||  ||||||||    
T  51285350 accctcactttt 51285361  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 236 - 342
Target Start/End: Complemental strand, 48494992 - 48494886
Alignment:
Q  236 acagcggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaacc 335  Q
    |||| |||||| |||||||||||||||| ||| |||||  |  |||||||||| ||  |||||| |||||||||||||||||||||||||||||||||||    
T  48494992 acagtggcggaaccacgtggggacaggggatggccatgatcgtcccattatttgtggaaaattaccaaaatacccttgagttaatatgaaatttacaacc 48494893  T
Q  336 atgccac 342  Q
    |||||||    
T  48494892 atgccac 48494886  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 241 - 341
Target Start/End: Original strand, 47508240 - 47508340
Alignment:
Q  241 ggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaaccatgcc 340  Q
    |||||||||||||| |||||||| ||| ||||||||  ||||| | |||   ||||||| ||||||||||||| ||||| ||||| ||||||||||||||    
T  47508240 ggcggagccacgtgaggacaggggatggccatggccaccccatcaatttgtggaaattaccaaaatacccttgggttaaaatgaattttacaaccatgcc 47508339  T
Q  341 a 341  Q
    |    
T  47508340 a 47508340  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 299
Target Start/End: Original strand, 5733165 - 5733223
Alignment:
Q  241 ggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaatta 299  Q
    ||||||||||| ||||||| ||| ||| |||| ||||||||||||||| ||||||||||    
T  5733165 ggcggagccacttggggactggggatggccatagcctacccattatttatgagaaatta 5733223  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 299
Target Start/End: Complemental strand, 12307993 - 12307935
Alignment:
Q  241 ggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaatta 299  Q
    ||||||||| | ||||||||||| ||| ||||||||||||||||| || || |||||||    
T  12307993 ggcggagccgcatggggacagggtatggccatggcctacccattagttctgtgaaatta 12307935  T

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Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 104 - 221
Target Start/End: Original strand, 4150765 - 4150890
Alignment:
Q  104 ttggatcgtttttggatttgtcgagttactca------actagtttgttcgagtt-ttactttt-agctatagtttttagttaatttaattactttcagc 195  Q
    |||||||||||||||||||| ||||||| |||      ||||||||||||  ||| |||||||| ||||||||||||||||||||||| |||||||||||    
T  4150765 ttggatcgtttttggatttgccgagttagtcattagtaactagtttgttcaggttgttactttttagctatagtttttagttaatttatttactttcagc 4150864  T
Q  196 tatttatactcatttaattttcactt 221  Q
    |||||||||||||| |||||||||||    
T  4150865 tatttatactcattcaattttcactt 4150890  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 256 - 337
Target Start/End: Original strand, 11139353 - 11139434
Alignment:
Q  256 ggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaaccat 337  Q
    |||| ||| ||| ||||||||| |||||||||||  |||||||||||||||||||||  ||||| |||||||||||||||||    
T  11139353 ggactggggatggccatggcctccccattattttatagaaattatcaaaatacccttaggttaaaatgaaatttacaaccat 11139434  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 241 - 341
Target Start/End: Original strand, 92312 - 92412
Alignment:
Q  241 ggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaaccatgcc 340  Q
    ||||||||||| ||||||||||| ||| ||||||||||||||||| || || |||||||  | |||||| ||||  |||| | || ||||||||||||||    
T  92312 ggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataatacctttgatataatcttaattttacaaccatgcc 92411  T
Q  341 a 341  Q
    |    
T  92412 a 92412  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 4150698 - 4150753
Alignment:
Q  13 ggcttaaaatggttgatttttggctttatgccatagggctcctccatctgcgatca 68  Q
    ||||||||||||||||||||||||||| |||||||  ||||||||||| |||||||    
T  4150698 ggcttaaaatggttgatttttggctttctgccatactgctcctccatccgcgatca 4150753  T

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Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 279 - 352
Target Start/End: Original strand, 32635363 - 32635436
Alignment:
Q  279 cccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaaccatgccactatcactttt 352  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  32635363 cccattatttatgagaaattaccaaaatacccttgagttaatatgaaatttacaaccatgccaccctcactttt 32635436  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 241 - 341
Target Start/End: Original strand, 37125557 - 37125657
Alignment:
Q  241 ggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaaccatgcc 340  Q
    ||||||||||| ||||||||| | ||| ||||||||||||||||| || |  |||||||  | |||||||||||  |||| | || ||||||||||||||    
T  37125557 ggcggagccacatggggacagagtatggccatggcctacccattaattctttgaaattactataatacccttgatataattttaattttacaaccatgcc 37125656  T
Q  341 a 341  Q
    |    
T  37125657 a 37125657  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 11033491 - 11033535
Alignment:
Q  241 ggcggagccacgtggggacagggaatgaccatggcctacccatta 285  Q
    |||||||||||||| |||||||||||| ||||||||  |||||||    
T  11033491 ggcggagccacgtgtggacagggaatggccatggccatcccatta 11033535  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 241 - 341
Target Start/End: Original strand, 39312538 - 39312638
Alignment:
Q  241 ggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaaccatgcc 340  Q
    |||||||||||||| ||||| || ||| ||||||||  ||||||| |||   ||||||| ||||||||||||| ||||| ||||| ||||||||||||||    
T  39312538 ggcggagccacgtgaggacatgggatggccatggccaccccattaatttgtggaaattaccaaaatacccttgggttaaaatgaattttacaaccatgcc 39312637  T
Q  341 a 341  Q
    |    
T  39312638 a 39312638  T

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Target: scaffold0026 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 91565 - 91634
Alignment:
Q  244 ggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttg 313  Q
    ||||||||||| |||||||| ||| |||||||||||||| ||||| || |||||||||| ||||||||||    
T  91565 ggagccacgtgaggacagggtatggccatggcctacccagtatttctgtgaaattatcataatacccttg 91634  T

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Target: scaffold1342 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold1342
Description:

Target: scaffold1342; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 299
Target Start/End: Original strand, 1231 - 1289
Alignment:
Q  241 ggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaatta 299  Q
    ||||||||||| ||||||||||| ||| ||||||||| ||||||||||||| |||||||    
T  1231 ggcggagccacttggggacaggggatggccatggcctgcccattatttttgtgaaatta 1289  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 299
Target Start/End: Original strand, 4009258 - 4009316
Alignment:
Q  241 ggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaatta 299  Q
    ||||||||||| ||||||||||| ||| ||||||||| ||||||||||||| |||||||    
T  4009258 ggcggagccacttggggacaggggatggccatggcctgcccattatttttgtgaaatta 4009316  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 325
Target Start/End: Complemental strand, 36620266 - 36620177
Alignment:
Q  236 acagcggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaa 325  Q
    |||| |||||||||||||| |||| ||| ||| | ||| ||| ||||||| ||||| ||||||| || ||||||||| || |||| ||||    
T  36620266 acagtggcggagccacgtgaggactgggtatggcgatgtcctgcccattaattttgtgaaattaccataatacccttaagctaatttgaa 36620177  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 338
Target Start/End: Original strand, 43326105 - 43326202
Alignment:
Q  241 ggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaaccatg 338  Q
    ||||||||||| || |||||||| ||   |||||||||||||||| || || |||||||  | |||||||||||  |||| | || ||||||||||||    
T  43326105 ggcggagccacatgaggacagggtatagtcatggcctacccattaattctgtgaaattactataatacccttgatataattttaattttacaaccatg 43326202  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 241 - 341
Target Start/End: Original strand, 55403338 - 55403438
Alignment:
Q  241 ggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaaccatgcc 340  Q
    ||||||||||| ||||||||| | |||  |||||||||||||||| || || |||||||  | |||||||||||  |||| | || ||||||||||||||    
T  55403338 ggcggagccacatggggacagagtatggtcatggcctacccattaattctgtgaaattactataatacccttgatataattttaattttacaaccatgcc 55403437  T
Q  341 a 341  Q
    |    
T  55403438 a 55403438  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 338
Target Start/End: Complemental strand, 13627456 - 13627363
Alignment:
Q  245 gagccacgtggggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaaccatg 338  Q
    |||||||||| |||||||| ||| ||||||||  ||||||| |||  | |||||| |||||||| ||||  |||| ||||| ||||||||||||    
T  13627456 gagccacgtgaggacaggggatggccatggccaccccattaatttgtaaaaattaccaaaatactcttggattaaaatgaattttacaaccatg 13627363  T

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