View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5070-Insertion-7 (Length: 184)
Name: NF5070-Insertion-7
Description: NF5070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5070-Insertion-7 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 3e-71; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 3e-71
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 36092970 - 36093113
Alignment:
| Q |
8 |
tgagtcgagcgacttctctttcactttgtatattcttcctttgtctccaattagtcaaaatcttcttcacttcttgatgatcgataagagaatcaactga |
107 |
Q |
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| T |
36092970 |
tgagtcgagcgacttctctttcactttgtatattcttcctttgtctccaattagccaaaatcttcttcacttcttgatgatcgataagagagtcaactga |
36093069 |
T |
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| Q |
108 |
ttttttataatttgtttgctctaaggaagtttcatgatcagtaa |
151 |
Q |
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| T |
36093070 |
ttttttataatttgtttgctctaaggaagtttcatgatcagtaa |
36093113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 36086977 - 36087120
Alignment:
| Q |
8 |
tgagtcgagcgacttctctttcactttgtatattcttcctttgtctccaattagtcaaaatcttcttcacttcttgatgatcgataagagaatcaactga |
107 |
Q |
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| T |
36086977 |
tgagtcgagcgatttctctttcactttgtatattcttcctttgtctccaattagccaaaatcttcttcacttcttgatgatcgataagagtatcaactgg |
36087076 |
T |
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| Q |
108 |
ttttttataatttgtttgctctaaggaagtttcatgatcagtaa |
151 |
Q |
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| T |
36087077 |
ctttttataatttgtttgctctaaggaagtttcatgatcagtaa |
36087120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 8 - 147
Target Start/End: Original strand, 36082211 - 36082350
Alignment:
| Q |
8 |
tgagtcgagcgacttctctttcactttgtatattcttcctttgtctccaattagtcaaaatcttcttcacttcttgatgatcgataagagaatcaactga |
107 |
Q |
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| T |
36082211 |
tgagtcgagcgacttctctttcactttgtatattcttcctttgtctccaattaaccaaaatcttcttcactttatgatgatcgataaaagtttcagctta |
36082310 |
T |
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| Q |
108 |
ttttttataatttgtttgctctaaggaagtttcatgatca |
147 |
Q |
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| T |
36082311 |
ttttttataatttgtttgctctaatgaagtttcctgatca |
36082350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 36090519 - 36090651
Alignment:
| Q |
8 |
tgagtcgagcgacttctctttcactttgtatattcttcctttgtctccaattagtcaaaatcttcttcacttcttgatgatcgataagagaatcaactga |
107 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |||||||| || |||||| ||||| |||||||||||| |||| |||||||| |||| || ||| |||| |
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| T |
36090519 |
tgagtcgagcggcttctctttcaatttgtgtattcttcattcgtctccgattagccaaaatcttcttagcttcatgatgatcaataaaagtgtcagctga |
36090618 |
T |
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| Q |
108 |
ttttttataatttgtttgctctaaggaagtttc |
140 |
Q |
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| T |
36090619 |
ttttttataattcgtttgctctgatgaagtttc |
36090651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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