View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5070-Insertion-8 (Length: 101)
Name: NF5070-Insertion-8
Description: NF5070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5070-Insertion-8 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 86; Significance: 1e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 1e-41
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 41967064 - 41966971
Alignment:
| Q |
8 |
tcatgtacccattttattcaatataagcacagtattcttgagtattatttcggcttacacaattatgatttatttattttatattttagataga |
101 |
Q |
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| T |
41967064 |
tcatgtacccattttattcaatataagcacagtattcttggttattatttcggcttacacaattatgatttatttattttatattttagataga |
41966971 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 1228683 - 1228609
Alignment:
| Q |
16 |
ccattttattcaatataagcacagtattcttgagtattatttcggcttacacaattatgatttatttattttatatt |
92 |
Q |
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| T |
1228683 |
ccattctattcaatataagcac-gtattcttgattattatttccgcttaga-attaatgatttatttattttatatt |
1228609 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 17059011 - 17058954
Alignment:
| Q |
44 |
cttgagtattatttcggcttacacaattatgatttatttattttatattttagataga |
101 |
Q |
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| T |
17059011 |
cttgattattatttcagcttacacaactagaattgatttattttatattttagataga |
17058954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 7504188 - 7504128
Alignment:
| Q |
41 |
attcttgagtattatttcggcttacacaattatgatttatttattttatattttagataga |
101 |
Q |
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| T |
7504188 |
attcttgattattatttcaacatacagaactatgatttatttgttttatattttagataga |
7504128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 13995844 - 13995884
Alignment:
| Q |
61 |
cttacacaattatgatttatttattttatattttagataga |
101 |
Q |
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| T |
13995844 |
cttacacaactataatttatttattttatattttagttaga |
13995884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 31220177 - 31220137
Alignment:
| Q |
61 |
cttacacaattatgatttatttattttatattttagataga |
101 |
Q |
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| T |
31220177 |
cttacacaactaaaatttatttattttatattttagataga |
31220137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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