View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5070_high_14 (Length: 238)
Name: NF5070_high_14
Description: NF5070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5070_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 54293022 - 54293230
Alignment:
| Q |
13 |
caaaggtgaagaggaagaatcaacgagttaaaggatgagggaataagagctgcaaaagtcattgtataacttgcaggatttgacagcatagatgtaaaga |
112 |
Q |
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| T |
54293022 |
caaaggtgaagaggaagaatcaacgagttaaaggatgagggaataagagctgcaaaagtcattgtatgacttgcaggatttgacagcatagatgtaaaga |
54293121 |
T |
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| Q |
113 |
aacatcaatactactctgcagaacctgacagcacaaaggcaaagggaaaactacacactactttgcggaatttgagattgataaaaaatctgtacagtag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54293122 |
aacatcaatactactctgcagaacctgacagcacaaaggcaaagggaaaactacacactactttgcggaatttgagattgataaaaaatctgtacagtag |
54293221 |
T |
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| Q |
213 |
tactattag |
221 |
Q |
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||||||||| |
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| T |
54293222 |
tactattag |
54293230 |
T |
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