View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5070_high_2 (Length: 613)
Name: NF5070_high_2
Description: NF5070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5070_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 442; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 66 - 591
Target Start/End: Complemental strand, 476119 - 475579
Alignment:
| Q |
66 |
gagtgtagcctattgtatagagaaattgatacaatttttcattctttaaatttaacacagttttttcaatcaacagtgtaatatatattcatcagctaaa |
165 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
476119 |
gagtgtagcctattgtatagagaaattgatacaatttttcattctttaaatttaacacagttttttcaatcaacagtgtaatatatattcatcagctaaa |
476020 |
T |
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| Q |
166 |
aattttataatttacctttcttgaagattcattttaaaaatttcatttgtctcataattaaccatt--ttatgctcttaattttgtatttctctcacaat |
263 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
476019 |
aaatttataatttacctttcttgaagattcattttaaaaatttcatttgtctcataattaaccattgattatgctcttaagtttgtatttctctcacaat |
475920 |
T |
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| Q |
264 |
aaatgaatacataaatgacaaagagtaaaaaagtaacttcaactgttattctcttcagctatatcatggaaagcnnnnnnnnnnnngatacagtgatgat |
363 |
Q |
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| T |
475919 |
aaatgaatacataaatgacaaagagtaaaaaagtaacttcaactgttattctcttcagctatatcatggaaagcaaacataaaaaagatacagtgatgat |
475820 |
T |
|
| Q |
364 |
gacattaatttt-------------aattatggaatgacattcattgattcctttttcaatcaacgttgtaatgtagattcatctgctaaaagagtttct |
450 |
Q |
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| T |
475819 |
gacattaattttaattaagctaaaaaattatggaatgacattcattgattcctttttcaatcaacgttgtaatgtagattcatctgctaaaagagtttct |
475720 |
T |
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| Q |
451 |
ttcaaatcggttatcaaaattttcacttcctctgtctgagtaaccatagattttggatctatcttctgtttgacatggactacatcttccgctttacccc |
550 |
Q |
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| T |
475719 |
ttcaaatcggttatcaaaattttcacttcctctgtctgagtaaccatagattttggatctatcttctgtttgacatggactacatcttccgctttacccc |
475620 |
T |
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| Q |
551 |
aaagcacgacatacaagccaatgatcactccaattgcgcct |
591 |
Q |
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| T |
475619 |
aaagcacgacatacaagccaatgatcactccaattgcgcct |
475579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 468 - 591
Target Start/End: Complemental strand, 449745 - 449622
Alignment:
| Q |
468 |
aattttcacttcctctgtctgagtaaccatagattttggatctatcttctgtttgacatggactacatcttccgctttaccccaaagcacgacatacaag |
567 |
Q |
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| T |
449745 |
aattttcacttcctctgtctcattaaccatagattttggaactatcttctctttaacatcaactacttcttcagctttaccccaaagtacaatatacaag |
449646 |
T |
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| Q |
568 |
ccaatgatcactccaattgcgcct |
591 |
Q |
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| T |
449645 |
ccaatgatcactccaattgcgcct |
449622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 476204 - 476144
Alignment:
| Q |
12 |
atcatcaacatagactaagagtggtgtaaaagatgaagctagtttattagtgaagagtgta |
72 |
Q |
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| T |
476204 |
atcatcaacatagactaagagtggtgtaaaagatgaagctagtttattagtgaagagtgta |
476144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 532 - 591
Target Start/End: Complemental strand, 457977 - 457918
Alignment:
| Q |
532 |
acatcttccgctttaccccaaagcacgacatacaagccaatgatcactccaattgcgcct |
591 |
Q |
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| T |
457977 |
acatcttcagctttaccccaaagcacagtatacaagccaatgatcactccaattgcgcct |
457918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 494 - 587
Target Start/End: Complemental strand, 469129 - 469036
Alignment:
| Q |
494 |
ccatagattttggatctatcttctgtttgacatggactacatcttccgctttaccccaaagcacgacatacaagccaatgatcactccaattgc |
587 |
Q |
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| T |
469129 |
ccatagattttggaactatattctctttaatatcaactacttcttcagctttaccccaaagtacaatatacaaaccaatgatcactccaattgc |
469036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 502 - 587
Target Start/End: Complemental strand, 481303 - 481218
Alignment:
| Q |
502 |
tttggatctatcttctgtttgacatggactacatcttccgctttaccccaaagcacgacatacaagccaatgatcactccaattgc |
587 |
Q |
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| T |
481303 |
tttggatctgtcttctctttgacttcagctacatcttcagctttaccccaaagtacagtatacaaacctatgatcactccaattgc |
481218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 491 - 587
Target Start/End: Original strand, 27489261 - 27489357
Alignment:
| Q |
491 |
taaccatagattttggatctatcttctgtttgacatggactacatcttccgctttaccccaaagcacgacatacaagccaatgatcactccaattgc |
587 |
Q |
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| T |
27489261 |
taacgatagatttttgatttcccttctctttcacatcaactacatcttcagcttttccccaaagaacaatatacaagccaatgatcactccaattgc |
27489357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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