View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5070_high_4 (Length: 476)
Name: NF5070_high_4
Description: NF5070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5070_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 27 - 465
Target Start/End: Original strand, 2305607 - 2306045
Alignment:
| Q |
27 |
atggattgtctcatgaggctgcagttaaaggagggcaatgcttagtttcttgaaagagatgcatgtgatccgatttaatttgatagtctttatcttcttc |
126 |
Q |
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| T |
2305607 |
atggattgtctcatgaggctgcagttaaaggagggcaatgcttagtttcttgaaagagatgcatgtgatccgatttaatttgatagtctttatcttcttc |
2305706 |
T |
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| Q |
127 |
attttcagcatcccaaaggaatttggcatatgaagctaggacatagctgcataatattaagtaaatataatagttagttaagtatcaacaagattaattg |
226 |
Q |
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| T |
2305707 |
attttcagcatcccaaaggaatttggcatatgaagctaggacataactgcataatattaagtaaatataatagttagttaagtatcaacaagattaattg |
2305806 |
T |
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| Q |
227 |
gttgtttcaaataaaatcatcaaagattatgccaaaatttaactcattatataacacttaatatggagaggaaagaaagaaaatcctttgctatatttta |
326 |
Q |
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| T |
2305807 |
gttgtttcaaataaaatcatcaaagattatgtcaaaatttaactcattatataacacttaatatggagaggaaagaaagaaaatcctttgctatatttta |
2305906 |
T |
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| Q |
327 |
taatacatcaatgttacaaccaataatttataataaccatgaacttgaagataaaatatttttacacatatgtcataattcaaattttactataaaacag |
426 |
Q |
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| T |
2305907 |
taatacatcaatgttacacccaataatttataataaccatgaacttgaagataaaatatttttacacatatgtcataattcaaattttactataaaacag |
2306006 |
T |
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| Q |
427 |
taatattattttttgaagtaactatataaatgtaatatt |
465 |
Q |
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| T |
2306007 |
taatattattttttgaagtaactatataaatgtaatatt |
2306045 |
T |
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Back To:
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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 44694294 - 44694230
Alignment:
| Q |
111 |
agtctttatcttcttcattttcagcatcccaaaggaatttggcatatgaagctaggacatagctg |
175 |
Q |
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| T |
44694294 |
agtcattatcttcatcttcttcagcatcccataggaattttgcatatgaagccaagacatagctg |
44694230 |
T |
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