View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5070_high_8 (Length: 352)
Name: NF5070_high_8
Description: NF5070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5070_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 8163895 - 8163570
Alignment:
| Q |
18 |
agcaatttccaacatatttagagcatcttgcaggtggagaggtgcctccatggtatccattaatggtatatgaaacaggctcattaagtgtcacccaatg |
117 |
Q |
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| T |
8163895 |
agcaatttccaacatatttagagcatcttgcaggtggagaagtgcctccatggtatccattaatggtgtaggaaacaggctcattaagtgtcacccaatg |
8163796 |
T |
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| Q |
118 |
cttaaccctatctccaaatgtcttgaagcaaaaatcagcataggcttcaaaatccttcctattttattcattaaattaaattaagaataagtttatatac |
217 |
Q |
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| T |
8163795 |
cttaaccctatctccaaatgtcttgaagcaaaaatcagcataggcttcaaaatccttcctattttattcattaaattaaattaagaataagtttatacac |
8163696 |
T |
|
| Q |
218 |
taacttttttgttgttacctttagaaaataatatatttataataggttacatttattttacttttgtaatagggtgttacttaagcttacactactttag |
317 |
Q |
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| T |
8163695 |
taacttttttgttgttacctttagaaaataatatatttataataggttacatttattttacttttgcaatagggtgttacttaagcttacactattttag |
8163596 |
T |
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| Q |
318 |
gactcagaaatcccttatattcatct |
343 |
Q |
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|||| ||||||||||| ||||||||| |
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| T |
8163595 |
gacttagaaatcccttgtattcatct |
8163570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 8139995 - 8139792
Alignment:
| Q |
19 |
gcaatttccaacatatttagagcatcttgcaggtggagaggtgcctccatggtatccattaatggtatatgaaacaggctcattaagtgtcacccaatgc |
118 |
Q |
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| T |
8139995 |
gcaatttgcaacatatttagaacatctaccaggtgcaaaagtaccaccattatatccattgatggtgtatgaataaggttcattaagtgtcacccaatgc |
8139896 |
T |
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| Q |
119 |
ttaaccctatctccaaatgtcttgaagcaaaaatcagcataggcttcaaaatccttcctattttattcattaaattaaattaagaataagtttatatact |
218 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| || | ||||||||||| |||||| ||||||| ||||||||||||||||||| | |
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| T |
8139895 |
ttaaccctatctccaaatgtcttgaagcaaaagtcagcatagactgcgaaatccttcctgttttatccattaaa-----ttaagaataagtttatatatt |
8139801 |
T |
|
| Q |
219 |
aactttttt |
227 |
Q |
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||| ||||| |
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| T |
8139800 |
aaccttttt |
8139792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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